Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
Genome size (bp): 2909809
Number of genes 2827
Oriloc predictions: Origin 0 kb Terminus 1442 kb
Worning et al., 2006: Origin 2908 kb Terminus 1407 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.523 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.82 kb
Consensus predictions: Origin 0 kb Terminus 1442 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 791 | 0 | 1454 |
| GC-skew reverse | 1918 | 0 | 1405 |
| AT-skew forward | 668 | 0 | 1220 |
| AT-skew reverse | 1869 | 0 | 1214 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 791 (1453.5595 kb) | leading | -0.113 |
| 792 (1453.9225 kb) | 1373 (2909.751 kb) | lagging | -0.17 | |
| GC-skew reverse | 1374 (0 kb) | 1918 (1405.1915 kb) | leading | 0.174 |
| 1919 (1409.4315 kb) | 2827 (2909.751 kb) | lagging | 0.106 | |
| AT-skew forward | 1 (0 kb) | 668 (1219.6705 kb) | leading | -0.153 |
| 669 (1220.054 kb) | 1373 (2909.751 kb) | NA | -0.002 | |
| AT-skew reverse | 1374 (0 kb) | 1869 (1214.088 kb) | leading | -0.007 |
| 1870 (1219.3625 kb) | 2827 (2909.751 kb) | lagging | 0.131 |
More G than C on the leading strand for replication.