Abstract
The family Opitutaceae, within the phylum Verrucomicrobia, is currently comprised of isolated microbial members of three different genera: Opitutus, Alterococcus, and Diplosphaera. This grouping is solely based on the phylogenetic analysis of their 16S rRNA gene sequences. Culture-independent studies indicate that family members can be found in freshwater and marine environments, hot springs, soils, and termite hindguts. All isolates are Gram negative and characterized for their coccus shape, cell size varying between 0.4 and 0.9 μm, and colorless or white colony formation on agar plates. Successful isolation has been associated with use of moderately recalcitrant heteropolysaccharides such as xylan and pectin. Sequenced genomes of four isolates revealed an average G + C content of 63.1 mol % and genome sizes ranging from 5.22 to 7.41 Mb. The ecological contributions of this family to different ecosystems remain to be understood.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Brune A, Ohkuma M (2011) Role of the termite gut microbiota in symbiotic digestion. In: Bignell DE, Roisin Y, Lo N (eds) Biology of termites: a modern synthesis. Springer, New York, pp 439–476
Burkert U, Pernthaler J, Warnecke F, Babenzien D, Zwirnmann E, Amann R (2003) Members of a readily enriched beta-proteobacterial clade are common in the surface waters of a humic lake. Appl Environ Microbiol 69:6550–6559
Chin KJ, Janssen PH (2002) Propionate formation by Opitutus terrae in pure culture and in mixed culture with a hydrogenotrophic methanogen and implications for carbon fluxes in anoxic rice paddy soil. Appl Environ Microbiol 68:2089–2092
Chin KJ, Rainey FA, Janssen PH, Conrad R (1998) Methanogenic degradation of polysaccharides and the characterization of polysaccharolytic clostridia from anoxic rice field soil. Syst Appl Microbiol 21:185–200
Chin KJ, Hahn D, Hengstmann U, Liesack W, Janssen PH (1999) Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms. Appl Environ Microbiol 65:5042–5049
Chin KJ, Liesack W, Janssen PH (2001) Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division ‘Verrucomicrobia’ isolated from rice paddy soil. Int J Syst Evol Microbiol 51:1965–1968
Choo YJ, Lee K, Song J, Cho JC (2007) Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov., and Opitutae classis nov. in the phylum Verrucomicrobia. Int J Syst Bacteriol 57:532–537
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141–D145
Hedlund BP (2010) Phylum XXIII. Verrucomicrobia phyl. nov. In: Krieg NR, Staley JT, Brown DR et al (eds) Bergey’s manual of systematic bacteriology. Springer, New York, pp 795–841
Hongoh Y, Ohkuma M, Kudo T (2003) Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae). FEMS Microbiol Ecol 44:231–242
Isanapong J, Goodwin L, Bruce D, Chen A, Detter C, Han J, Han CS, Held B, Huntemann M, Ivanova N, Land ML, Mavromatis K, Nolan M, Pati A, Pennacchio L, Pitluck S, Szeto E, Tapia R, Woyke T, Rodrigues JLM (2012) High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes. J Bacteriol 194:2744–2745
Janssen PH, Schuhmann A, Morschel E, Rainey FA (1997) Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63:1382–1388
Köhler T, Dietrich C, Scheffrahn RH, Brune A (2012) High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.). Appl Environ Microbiol 78:4691–4701
Konstantinidis K, Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187:6258–6264
Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PSG, Reitenga KG, Xie G, Poulton NJ, Gomez ML, Masland DED, Thompson B, Bellows WK, Ziervogel K, Lo C-C, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R (2012) Capturing single cell genomes of active polysaccharide degraders: an expected contribution of Verrucomicrobia. PLoS One 4:e353144
Parveen B, Mary I, Vellet A, Ravet V, Debroas D (2012) Temporal dynamics of phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake. FEMS Microbiol Ecol 83:189–201
Rosengaus RB, Zecher CN, Shultheis KF, Brucker RM, Bordenstein SR (2011) Disruption of the termite gut microbiota and its prolonged consequences for fitness. Appl Environ Microbiol 77:4303–4312
Shieh WY, Jean WD (1998) Alterococcus agarolyticus, gen nov., sp. nov., a halophilic thermophilic bacterium capable of agar degradation. Can J Microbiol 44:637–645
Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM, Breznak JA (2004) New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microbiol 70:4748–4755
Teeling H, Meyerdierks A, Bauer M, Amann R, Glockner FO (2004) Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ Microbiol 6:938–947
van Passel MWJ, Kant R, Palva A, Copeland A, Lucas S, Lapidus A, del Rio TG, Pitluck S, Goltsman E, Clum A, Sun H, Schmutz J, Larimer FW, Land ML, Hauser L, Kyrpides N, Mikhailova N, Richardson PP, Janssen PH, de Vos WM, Smidt H (2011) Genome sequence of the Verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems. J Bacteriol 193:2367–2368
Wertz JT, Kim E, Breznak JA, Schmidt TM, Rodrigues JLM (2012) Genomic and physiological characterization of the Verrucomicrobia isolate Diplosphaera colitermitum gen. nov., sp. nov., reveals microaerophily and nitrogen fixation genes. Appl Environ Microbiol 78:1544–1555
Widdel F, Bak F (1991) Gram negative mesophilic sulfate-reducing bacteria. In: Balows A, Trupper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes, vol 4, 2nd edn. Springer, New York, pp 3352–3378
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer-Verlag Berlin Heidelberg
About this entry
Cite this entry
Rodrigues, J.L.M., Isanapong, J. (2014). The Family Opitutaceae . In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38954-2_147
Download citation
DOI: https://doi.org/10.1007/978-3-642-38954-2_147
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-38953-5
Online ISBN: 978-3-642-38954-2
eBook Packages: Biomedical and Life SciencesReference Module Biomedical and Life Sciences