Abstract
We describe Allocanariomyces tritici gen et sp. nov. and Achaetomium aegilopis sp. nov. as seed endophytes of Triticum boeoticum and Aegilops triuncialis, respectively, in the west and northwestern Iran using morphological traits and sequences of the internal transcribed spacer regions 1 and 2 including the intervening 5.8S nuclear ribosomal DNA (ITS), partial nuclear 28S ribosomal DNA (LSU), β-tubulin (TUB2), and the second-largest subunit of DNA-directed RNA polymerase II (RPB2) gene. Chaetomium carinthiacum, C. iranianum, and C. truncatulum are also combined here under the new genus, Parachaetomium. Allocanariomyces is differentiated from Canariomyces, its closest relative, by having solitary and glabrous ascomata, cells of the perithecial wall forming a textura epidermoidea, stalked asci, densely granular ascospores with a distinct subapical germ pore, and producing only solitary conidia. Parachaetomium is characterized by distinctly ostiolate ascomata and equi- or inequilaterally fusiform, typically less than 13-μm-long ascospores with an oblique or subapical germ pore. Achaetomium aegilopis is mainly distinguished from A. strumarium, its closest relative, by possessing brown, ascomata, hyaline ascomatal hairs covered with hyaline crystals, hyaline chlamydospores, and lacking an anamorph.
Similar content being viewed by others
Data availability
All sequence data generated in this study (Table 1) are available at GenBank (https://www.ncbi.nlm.nih.gov/genbank/). Alignments can be accessed via electronic supplementary material and TreeBASE (http://www.treebase.org).
References
Abbott SP, Sigler L, McAleer R et al (1995) Fatal cerebral mycoses caused by the ascomycete Chaetomium strumarium. J Clin Microbiol 33:2692–2698
Ahmed SA, Khan Z, Wang XW et al (2016) Chaetomium-like fungi causing opportunistic infections in humans: a possible role for extremotolerance. Fungal Divers 76:11–26. https://doi.org/10.1007/s13225-015-0338-5
Alexopoulos CJ (1962) Introductory mycology, 2nd edn. Wiley, New York
Ames LM (1963) A monograph of the Chaetomiaceae. U.S. Army Research and Development, Series 2, 125 p
Asgari B, Zare R (2011) The genus Chaetomium in Iran, a phylogenetic study including six new species. Mycologia 103:863–882. https://doi.org/10.3852/10-349
Barr ME (1976) Perspectives in the Ascomycotina. Mem New York Botan G 28:1–8
Cai L, Jeewon R, Hyde KD (2006) Molecular systematics of Sordariaceae based on multiple gene sequences and morphology. Mycol Res 110:137–150
Cannon PF (1986) A revision of Achaetomium, Achaetomiella and Subramaniula, and some similar species of Chaetomium. Trans Br Mycol Soc 87:45–76
Crous PW, Wingfield MJ, Burgess TI et al (2017) Fungal planet description sheets: 625–715. Persoonia 39:270–467. https://doi.org/10.3767/persoonia.2017.39.11
Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772
de Hoog GS, Ahmed SA, Najafzadeh MJ et al (2013) Phylogenetic findings suggest possible new habitat and routes of infection of human eumyctoma. PLOS Neglect Trop D 7(5):e2229. https://doi.org/10.1371/journal.pntd.0002229
Domsch KH, Gams W, Anderson T-H (2007) Compendium of soil fungi, 2nd edn. IHW Verlag, München 672 p
Florea S, Schardl CL, Hollin W (2015) Detection and isolation of Epichloë species, fungal endophytes of grasses. Curr Protoc Microbiol 38:19A.11.11–19A.11.24. https://doi.org/10.1002/9780471729259.mc19a01s38
Glass NL, Donaldson GC (1995) Development of primer set designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microb 61:1323–1330
Greif MD, Stchigel AM, Huhndorf SM (2009) A re-evaluation of genus Chaetomidium based on molecular and morphological characters. Mycologia 101:554–564. https://doi.org/10.3852/08-200
Hawksworth DL, Wells H (1973) Ornamentation on the terminal hairs in Chaetomium Kunze ex Fr. and some allied genera. Mycol Pap 134:1–24
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic tress. Bioinformatics 17:754–755. https://doi.org/10.1093/bioinformatics/17.8.754
Index Fungorum (2020) Home page at: http://www.indexfungorum.org/Names/Names.asp. Accessed 20 May 2020
Katoh K, Rozewicki J, Yamada KD (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform 20:1160–1166. https://doi.org/10.1093/bib/bbx108
Lee SJ, Hanlin RT (1999) Phylogenetic relationships of Chaetomium and similar genera based on ribosomal DNA sequences. Mycologia 91:434–442. https://doi.org/10.1080/00275514.1999.12061037
Liu D, Coloe S, Baird R, Pedersen J (2000) Rapid mini-preparation of fungal DNA for PCR. J Clin Microbiol 38:471
Lumbsch HT, Huhndorf SM (2010) Myconet volume 14 part one. Outline of Ascomycota-2009. Fieldiana Life Earth Sci 1:1–922. https://doi.org/10.3158/1557.1
Maharachchikumbura SSN, Hyde KD, Jones EBG et al (2016) Families of Sordariomycetes. Fungal Divers 79:1–317. https://doi.org/10.1007/s13225-016-0369-6
Marin-Felix Y, Stchigel AM, Miller AN, Guarro J, Cano-Lira JF (2015) A re-evaluation of the genus Myceliophthora (Sordariales, Ascomycota): its segregation into four genera and description of Corynascus fumimontanus sp. nov. Mycologia 107:619–632. https://doi.org/10.3852/14-228
Mehrabi M, Hemmati R, Vasilyeva LN, Trouillas FP (2016) Diatrypella macrospora sp. nov. and new records of diatrypaceous fungi from Iran. Phytotaxa 252:43–55. https://doi.org/10.11646/phytotaxa.252.1.4
Mehrabi M, Asgari B, Hemmati R (2018) Knufia perfecta, a new black yeast from Iran, and a key to Knufia species. Nova Hedwigia 106:519–534. https://doi.org/10.1127/nova_hedwigia/2017/0450
Miller AN, Huhndorf SM (2005) Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Mol Phylogenet Evol 35:60–75. https://doi.org/10.1016/j.ympev.2005.01.007
Miller MA, PfeifferW ST (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), November 14, 2010. New Orleans, Louisiana, pp 1–8
Mukerji KG (1968) The position of the genus Achaetomium in Pyrenomycetes. P Indian Acad Sci 34:288–292
Müller E, von Arx JA (1973) Pyrenomycetes: Meliolales, Coronophorales, Sphaeriales. In: Ainsworth GC, Sparrow FK, Sussman AS (eds) The fungi, vol 6A. Academic, New York, pp 87–132
Noumeur SR, Teponno RB, Helaly SE, Wang XW, Harzallah D, Houbraken J, Crous WP, Stadler M (2020) Diketopiperazines from Batnamyces globulariicola, gen. & sp. nov. (Chaetomiaceae), a fungus associated with roots of the medicinal plant Globularia alypum in Algeria. Mycol Prog 19:589–603. https://doi.org/10.1007/s11557-020-01581-9
Rai JN, Tewari JP, Mukerji KG (1964) Achaetomium, a new genus of Ascomycetes. Can J Bot 42:693–697
Rambaut A (2012) FigTree version 1.4.0. available from: http://tree.bio.ed.ac.uk/software/figtree/. Accessed 20 May 2013
Rayner RW (1970) A mycological colour chart. CMI and British Mycological Society, Kew
Rehner SA, Samuels GJ (1995) Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 73(Suppl. 1):S816–S823. https://doi.org/10.1139/b95-327
Rodríguez K, Stchigel AM, Cano JF, Guarro J (2004) A new species of Achaetomium from Indian soil. Stud Mycol 50:77–82
Sörgel G (1961) Zur Variabilität in der Gattung Chaetomium, dargestellt am Beispiel der Art carinthiacum. Arch Mikrobiol 40:383–394
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313
Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods) version 4.0b10. Sinauer Associates, Sunderland. https://doi.org/10.1111/j.0014-3820.2002.tb00191.x
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725–2729. https://doi.org/10.1093/molbev/mst197
van den Brink J, Samson RA, Hagen F, Boekhout T, de Vries RP (2012) Phylogeny of the industrial relevant, thermophilic genera Myceliophthora and Corynascus. Fungal Divers 52:197–207
Violi HA, Menge JA, Beaver RJ (2007) Chaetomium elatum (Kunze: Chaetomiaceae) as a root-colonizing fungus in avocado: is it a mutualist, cheater, commensalistic associate, or pathogen? Am J Bot 94:690–700. https://doi.org/10.3732/ajb.94.4.690
von Arx JA (1984) Canariomyces notabilis, a peculiar ascomycete from the Canary Islands. Persoonia 12:185–187
von Arx JA, Dreyfuss M, Müller E (1984) A reevaluation of Chaetomium and Chaetomiaceae. Persoonia 12:169–179
von Arx JA, Guarro J, Figueras MJ (1986) The ascomycete genus Chaetomium. Beih Nova Hedwigia 84:1–162
Vu D, Groenewald M, de Vries M, Gehrmann T, Stielow B, Eberhardt U, Al-Hatmi A, Groenewald JZ, Cardinali G, Houbraken J, Boekhout T, Crous PW, Robert V, Verkley GJM (2019) Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Stud Mycol 92:135–154
Wang XW, Wang XL, Liu FJ et al (2014) Phylogenetic assessment of Chaetomium indicum and allied species, with the introduction of three new species and epitypification of C. funicola and C. indicum. Mycol Prog 13:719–732. https://doi.org/10.1007/s11557-013-0955-x
Wang XW, Houbraken J, Groenewald JZ et al (2016a) Diversity and taxonomy of Chaetomium and chaetomium-like fungi from indoor environments. Stud Mycol 84:145–224. https://doi.org/10.1016/j.simyco.2016.11.005
Wang XW, Lombard L, Groenewald JZ et al (2016b) Phylogenetic reassessment of the Chaetomium globosum species complex. Persoonia 36:83–133. https://doi.org/10.3767/003158516X689657
Wang XW, Yang FY, Meijer M et al (2019a) Redefining Humicola sensu stricto and related genera in the Chaetomiaceae. Stud Mycol 93:65–153. https://doi.org/10.1016/j.simyco.2018.07.001
Wang XW, Bai FY, Bensch K et al (2019b) Phylogenetic re-evaluation of Thielavia with the introduction of a new family Podosporaceae. Stud Mycol 93:155–252. https://doi.org/10.1016/j.simyco.2019.08.002
White TJ, Bruns T, Lee S et al (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ et al (eds) PCR protocols: a guide to methods and applications. Academic Press, New York, pp 315–322
Wijayawardene NN, Hyde KD, Lumbsch HT et al (2017) Outline of Ascomycota – 2017. Fungal Divers 88:167–263. https://doi.org/10.1007/s13225-018-0394-8
Winter G (1885) Ascomyceten: Gymnoasceen und Pyrenomyceten. Rabenhorst’s Kryptogamen-Flora von Deutschland, Oesterreich und der Schweiz 1, 2
Zhang N, Castlebury LA, Miller AN et al (2006) An overview of the systematics of the Sordariomycetes based on four-gene phylogeny. Mycologia 98:1076–1087. https://doi.org/10.3852/mycologia.98.6.1076
Acknowledgments
The authors are grateful to Ms. Z. Ghanbari for technical assistance.
Funding
This work was supported by a research grant from the Iranian National Science Foundation (96010651).
Author information
Authors and Affiliations
Contributions
Samples were collected by B. Asgari and M. Mehrabi. Experiments, data analysis, and original draft preparation were conducted by M. Mehrabi. B. Asgari carried out data analysis and review and editing of the manuscript. R. Zare designed the research and revised the manuscript. All authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethics approval
Not applicable.
Consent to participate
Not applicable.
Consent for publication
Not applicable.
Additional information
Section Editor: Hans-Josef Schroers
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Mehrabi, M., Asgari, B. & Zare, R. Description of Allocanariomyces and Parachaetomium, two new genera, and Achaetomium aegilopis sp. nov. in the Chaetomiaceae. Mycol Progress 19, 1415–1427 (2020). https://doi.org/10.1007/s11557-020-01636-x
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11557-020-01636-x