Abstract
The photosynthetic world is not only dominated by the green color of trees and plants.
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References
Abe K, Jordan RW (2021) Re-examination of Archaeomonas mirabilis from the Late Cretaceous reveals its true identity as the oldest known fossil Parmales (Bolidophyceae). Phycologia 60:362–367
Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q (2019) Revisions to the classification, nomenclature, and diversity of Eukaryotes. J Eukaryotic Microbiol 66:4–119. https://doi.org/10.1111/jeu.12691
Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn SM, Hampel V, Heiss A, Hoppenrath M, Lara E, le Gall L, Lynn DH, McManus H, Mitchel EAD, Mozley-Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick L, Schoch CL, Smirnov A, Spiegel F (2012) The revised classification of eukaryotes. J Eukaryot Microbiol 59(5):429–514
Adl SM, Simpson AGB, Farmer MA, Andersen RA, Anderson OR, Barta JR, Bowser SS, Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE, Lewis LA, Lodge J, Lynn DH, Mann DG, McCourt RM, Mendoza L, Moestrup O, Mozley-Standridge SE, Nerad TA, Shearer CA, Smirnov AV, Spiegel FW, Taylor M (2005) The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 52(5):399–451
Agardh CA (1824) Systema algarum. Lund, Literis Berlingianis
Ainis AF, Erlandson JM, Gill KM, Graham MH, Vellanoweth RL (2019) The potential use of seaweeds and marine plants by native peoples of Alta and Baja California: implications for “marginal” island ecosystems. In An Archaeology of Abundance. University Press of Florida, pp 135–170
Alexander H, Jenkins BD, Rynearson TA, Dyhrman ST (2015) Metatranscriptome analyses indicate resource partitioning between diatoms in the field. Proc Natl Acad Sci 112:E2182–E2190
Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H et al (2011) Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473:203–207
Allison CW, Hilgert JW (1986) Scale microfossils from the early cambrian of northwest Canada. J Paleontol 60:973–1015
Allorge P (1930) Hétérocontes ou Xanthophycées? Rev Algol 5:230
Altenburger A, Blossom HE, Garcia-Cuetos L, Jakobsen HH, Carstensen J, Lundholm N, Hansen PJ, Moestrup Ø, Haraguchi L (2020) Dimorphism in cryptophytes - The case of Teleaulax amphioxeia/Plagioselmis prolonga and its ecological implications. Sci Adv 6:eabb1611
Ammermann S, Schneider T, Westermann M, Hillebrand H, Rhiel E (2013) Ejectisins: tough and tiny polypeptides are a major component of cryptophycean ejectisomes. Protoplasma 250:551–563
Andersen RA (1982) A light and electron microscopical investigation of Ochromonas sphaerocystis Matvienko (Chrysophyceae): the statospore, vegetative cell and its peripheral vesicles. Phycologia 21(3):390–398
Andersen RA (1987) Synurophyceae classis nov., a new class of algae. Am J Bot 74:337–353
Andersen RA (1989) Absolute orientation of the flagellar apparatus of Hibberdia magna comb. nov. (Chrysophyceae). Nord J Bot 8:653–669
Andersen RA (1990) The three-dimensional structure of the flagellar apparatus of Chrysosphaerella brevispina (Chrysophyceae) as viewed by high voltage electron microscopy stereo pairs. Phycologia 29:86–97
Andersen RA (1991) The cytoskeleton of chromophyte algae. Protoplasma 164:143–159
Andersen RA (2004) A historical review of heterokont phylogeny. Japanese J Phycol 52:153–162
Andersen RA (2007) Molecular systematics of the chrysophyceae and synurophyceae. In: Brodie J, Lewis J (eds) Unravelling the Algae. CRC Press, pp 285–313
Andersen RA (2011) Ochromonas moestrupii sp. nov. (Chrysophyceae), a new golden flagellate from Australia. Phycologia 50:600–607
Andersen RA, Bailey JC (2002) Phylogenetic analysis of 32 strains of Vaucheria (Xanthophyceae) using the rbcL gene and its two flanking regions. J Phycol 38:583–592
Andersen RA, Barr DJS, Lynn DH, Melkonian M, Moestrup Ø, Sleigh MA (1991) Terminology and nomenclature of the cytoskeletal elements associated with the flagellar/ciliary apparatus in protists. Protoplasma 164(1–3):1–8
Andersen RA, Bidigare RR, Keller MD, Latasa M (1996) A comparison of HPLC pigment signatures and electron microscopic observations for oligotrophic waters of the North Atlantic and Pacific Oceans. Deep Sea Res II: Top Stud Oceanogr 43(2–3):517–537
Andersen RA, Graf L, Malakhov Y, Yoon HS (2017) Rediscovery of the Ochromonas type species Ochromonas triangulata (Chrysophyceae) from its type locality (Lake Veysove, Donetsk region, Ukraine). Phycologia 56:591–604
Andersen RA, Potter D, Craig Bailey J (2002) Pinguiococcus pyrenoidosus gen. et sp. nov. (Pinguiophyceae), a new marine coccoid alga. Phycol Res 50:57–65
Andersen RA, Preisig H (2002a) Pelagophyceae. In: Lee JJ, Leedale GF, Bradbury PC (eds) An illustrated guide to the protozoa, vol 2, 2nd edn. Society of Protozoologists, Lawrence, Kansas, USA, pp 733–743
Andersen RA, Preisig H (2002b) Synurophyceae. In: Lee JJ, Leedale GF, Bradbury PC (eds) An illustrated guide to the protozoa, vol 2, 2nd edn. Society of Protozoologists, Lawrence, Kansas, USA, pp 759–775
Andersen RA, Saunders GW, Paskind MP, Sexton JP (1993) Ultrastructure and 18S R RNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov. J Phycol 29:701–715
Anderson DM, Alpermann TJ, Cembella AD, Collos Y, Masseret E, Montresor M (2012) The globally distributed genus Alexandrium: multifaceted roles in marine ecosystems and impacts on human health. Harmful Algae 14:10–35. https://doi.org/10.1016/j.hal.2011.10.012
Anderson DM, Fensin E, Gobler CJ, Hoeglund AE, Hubbard KA, Kulis DM, Landsberg JH et al (2021) Marine harmful algal blooms (HABs) in the United States: history, current status and future trends. Harmful Algae 102:101975
Andersson JO, Roger AJ (2002) A cyanobacterial gene in nonphotosynthetic protists - an early chloroplast acquisition in eukaryotes? Curr Biol 12:115–119
Andreoli C, Bresciani E, Moro I, Scarabel L, La Rocca N, Dalla Valle L, Ghion F (1999) A survey on a persistent greenish bloom in the Comacchio lagoons (Ferrara, Italy). Botanica Marina, p 42
Annenkova NV, Hansen G, Rengefors K (2020) Closely related dinoflagellate species in vastly different habitats – an example of a marine–freshwater transition. Eur J Phycol 1–12. https://doi.org/10.1080/09670262.2020.1750057
Antia NJ, Kalley JP, McDonald J, Bisalputra T (1973) Ultrastructure of the marine cryptomonad Chroomonas salina cultured under conditions of photoautotrophy and glycerol- heterotrophy. J Protozool 20:377–385
Apt KE, Collier JL, Grossman AR (1995) Evolution of the Phycobiliproteins. J Mol Biol 248:79–96
Araújo R, Vázquez Calderón F, Sánchez López J, Azevedo IC, Bruhn A, Fluch S, Garcia Tasende M et al. (2021) Current status of the algae production industry in Europe: an emerging sector of the blue bioeconomy. Front Marine Sci 7
Archer L, Mc Gee D, Paskuliakova A, McCoy GR, Smyth T, Gillespie E, Touzet N (2019) Fatty acid profiling of new Irish microalgal isolates producing the high-value metabolites EPA and DHA. Algal Res 44:101671
Archibald JM (2007) Nucleomorph genomes: structure, function, origin and evolution. Bioessays 29(4):392–402
Archibald A, Cunningham W, Manners D, Stark J, Ryley J (1963) Studies on the metabolism of the Protozoa. 10. The molecular structure of the reserve polysaccharides from Ochromonas malhamensis and Peranema trichophorum. Biochem J 88:444–451
Archibald JM, Keeling PJ (2002) Recycled plastids: a ‘green movement’ in eukaryotic evolution. Trends Genet 18(11):577–584
Archibald JM, Lane CE (2009) Going, going, not quite gone: nucleomorphs as a case study in nuclear genome reduction. J Hered 100(5):582–590
Archibald JM, Simpson AGB, Slamovits CH (eds) (2017) Handbook of the protists. Springer International Publishing, Cham, p 1657
Archontikis OA, Young JR (2021) A reappraisal of the taxonomy and biodiversity of the extant coccolithophore genus Palusphaera (Rhabdosphaeraceae, Prymnesiophyceae). Phycologia. https://doi.org/10.1080/00318884.2021.1965758
Ariztia EV, Andersen RA, Sogin ML (1991) A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae). J Phycol 27:428–436
Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S et al (2004) The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306:79–86
Arvola L, Ojala A, Barbosa F, Heaney SI (1991) Migration behaviour of three cryptophytes in relation to environmental gradients: an experimental approach. Brit Phycol J 26:361–373
Asakawa M, Gomez-Delan G, Barte-Quilantang M, Ito K (2015) Paralytic shellfish poison (PSP)–producing dinoflagellate and PSP-infested organisms. In Ohtsuka S, Suzaki T, Horiguchi T, Suzuki N,Not F (eds) Marine protists: diversity and dynamics, pp 567–596. Tokyo, Springer Japan. https://doi.org/10.1007/978-4-431-55130-0_24
Aumeier C, Polinski E, Menzel D (2015) Actin, actin-related proteins and profiling in diatoms: a comparative genomic analysis. Mar Genomics 23:133–142
Avia K, Coelho SM, Montecinos GJ, Cormier A, Lerck F, Mauger S, Faugeron S, Valero M, Cock JM, Boudry P (2017) High-density genetic map and identification of QTLs for responses to temperature and salinity stresses in the model brown alga Ectocarpus. Sci Rep 7:43241. https://doi.org/10.1038/srep43241
Bach LT, Mackinder LCM, Schulz KG, Wheeler G, Schroeder DC, Brownlee C, Riebesell U (2013) Dissecting the impact of CO2 and pH on the mechanisms of photosynthesis and calcification in the coccolithophore Emiliania huxleyi. New Phytol 199:121–134
Bachvaroff TR, Sanchez Puerta MV, Delwiche CF (2005) Chlorophyll c–containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol 22:1772–1782
Badger MR, Andrews TJ, Whitney SM, Ludwig M, Yellowlees DC, Leggat W, Price GD (1998) The diversity and coevolution of rubisco, plastids, pyrenoids, and chloroplast-based CO2-concentrating mechanisms in algae. Can J Bot 76:1052–1071
Badis Y, Scornet D, Harada M, Caillard C, Godfroy O, Raphalen M, Gachon CMM et al (2021) Targeted CRISPR-Cas9-based gene knockouts in the model brown alga Ectocarpus. New Phytol 231(5):2077–2091
Baker AL, Gretz MR, Coesel PFM, Delwiche C, Sarnoff S, Silverside AJ, Van Egmond W et al (2012) Phycokey—an image based key to Algae (PS Protista), Cyanobacteria, and other aquatic objects. University of New Hampshire Center for Freshwater Biology. http://cfb.unh.edu/phycokey/phycokey.htm
Ball SG, Morell MK (2003) From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule. Annu Rev Plant Biol 54(1):207–233
Ballen-Segura M, Felip M, Catalan J (2016) Some mixotrophic flagellate species graze on Archaea. Appl Environ Microbiol 83:e02317-e2416
Barcytė D, Eikrem W, Engesmo A, Seoane S, Wohlmann J, Horák A, Yurchenko T et al (2021) Olisthodiscus represents a new class of Ochrophyta. J Phycol 57(4):1094–1118
Barsanti L, Gualtieri P (2020) Anatomy of Euglena gracilis. In Konur O (ed) Handbook of Algal Science, Technology and Medicine. Academic Press, London
Barsanti L, Passarelli V, Evangelista V, Frassanito AM, Gualtieri P (2011) Chemistry, physico-chemistry and applications linked to biological activities of β-glucans. Nat Prod Rep 28(3):457–466
Bäumer D, Preisfeld A, Ruppel HG (2001) Isolation and characterization of paramylon synthase from Euglena gracilis (euglenophyceae). J Phycol 37(1):38–46
Beakes GW, Honda D, Thines M (2014) 3 Systematics of the straminipila: labyrinthulomycota, hyphochytriomycota, and oomycota. In: McLaughlin DJ, Spatafora JW (eds) Systematics and evolution. Springer, Berlin Heidelberg, Berlin, Heidelberg, pp 39–97
Beech PL, Wetherbee R, Pickett-Heaps JD (1990) Secretion and deployment of bristles in Mallomonas splendens (Synurophyceae). J Phycol 26:112–122
Belcher JH (1969) A morphological study of the phytoflagellate Chrysococcus Rufescens Klebs in culture. Brit Phycol J 4:105–117
Belhadri A, Brugerolle G (1992) Morphogenesis of the feeding apparatus of Entosiphon sulcatum: an immunofluorescence and ultrastructural study. Protoplasma 168:125–135
Bell M (1981) Seaweed as a prehistoric resource. In: Brothwell DR, Dimbleby GW (eds) Environmental aspects of coasts and islands. British Archaeological Reports, Oxford, pp 117–126
Ben Ali A, De Baere R, De Wachter R, Van de Peer Y (2002) Evolutionary relationships among heterokont algae (the autotrophic Stramenopiles) based on combined analyses of small and large subunit ribosomal RNA. Protist 153:123–132
Bendif E, Probert I, Herve A, Billard C, Goux D, Lelong C, Cadoret JP, Veron B (2011) Integrative taxonomy of the Pavlovophyceae (Haptophyta): a reassessment. Protist 162:738–761
Bennett MS, Triemer RE (2012) A new method for obtaining nuclear gene sequences from field samples and taxonomic revisions of the photosynthetic euglenoids Lepocinclis (Euglena) helicoideus and Lepocinclis (phacus) horridus (Euglenophyta)1. J Phycol 48(1):254–260
Bennett MS, Triemer RE (2014) The genus Cyclidiopsis: an obituary. J Eukaryotic Microbiol 61(2):166–172
Bennett MS, Triemer RE (2015) Chloroplast genome evolution in the Euglenaceae. J Eukaryot Microbiol 62(6):773–785
Bennett MS, Wiegert KE, Triemer RE (2012) Comparative chloroplast genomics between Euglena viridis and Euglena gracilis (Euglenophyta). Phycologia 51(6):711–718
Bennett MS, Wiegert KE and Triemer RE (2014). Characterization of Euglenaformis gen. nov. and the chloroplast genome of Euglenaformis [Euglena] proxima (Euglenophyta). Phycologia 53(1):66–73
Bennett S, Wernberg T, Connell SD, Hobday AJ, Johnson CR, Poloczanska ES (2016) The “Great Southern Reef”: social, ecological and economic value of Australia’s neglected kelp forests. Mar Freshw Res 67:47
Berney C, Pawlowski J (2006) A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Royal Soc b: Biol Sci 273:1867–1872
Bertaux O, Mederic C, Valencia R (1991) Amplification of ribosomal DNA in the nucleolus of vitamin B12-deficient Euglena cells. Exp Cell Res 195(1):119–128
Bhattacharya D, Yoon HS, Hackett JD (2004) Photosynthetic eukaryotes unite: endosymbiosis connects the dots. BioEssays 26:50–60. https://doi.org/10.1002/bies.10376
Biecheler B (1936) Sur une chloromonadine nouvelle d’eau saumatre Chattonella subsalsa n. gen., n. sp. Archives De Zoologie Experimentale Et Générale 78:79–83
Bielewicz S, Bell E, Kong W, Friedberg I, Priscu JC, Morgan-Kiss RM (2011) Protist diversity in a permanently ice-covered Antarctic Lake during the polar night transition. ISME J 5:1559–1564
Billard C, Inouye I (2004) What is new in coccolithophore biology? In: Thierstein HR, Young EB (eds) Coccolithophores: from molecular process to global impact. Springer, Berlin/Heidelberg/New York, pp 1–29
Billard C (1984) Recherches sur les Chrysophyceae marines de l’ordre des Sarcinochrysidales. Biologie, systématique, phylogénie. Ph.D. dissertation, l’Université de Caen, Caen, France
Billoud B, Jouanno É, Nehr Z, Carton B, Rolland É, Chenivesse S, Charrier B (2015) Localization of causal locus in the genome of the brown macroalga Ectocarpus: NGS-based mapping and positional cloning approaches. Front Plant Sci 6. https://doi.org/10.3389/fpls.2015.00068
Bird DF, Kalff J (1986) Bacterial grazing by planktonic lake algae. Science 231:493–495
Bisalputra T (1966) Electron microscopic study of the protoplasmic continuity in certain brown algae. Can J Bot 44:89–93
Bjørnland T, Liaaen-Jensen S (1989) Distribution patterns of carotenoids in relation to chromophyte phylogeny and systematics. In: Green JC, Leadbeater BSC, Diver WI (eds) The chromophyte algae: problems and perspectives. Clarendon, Oxford, pp 37–60
Blackman FF (1900) The primitive algae and the flagellata. An account of modern work bearing on the evolution of the algae. Annals of Botany. os-14:647–688
Blackwell WH, Powell MJ (2000) A review of group filiation of stramenopiles, additional approaches to the question. Evolut Theory 12:49–88
Bobadilla M, Santelices B (2005) Variations in the dispersal curves of macroalgal propagules from a source. J Exp Mar Biol Ecol 327:47–57
Bodył A, Stiller JW, Mackiewicz P (2009) Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol Evol 24:119–121. https://doi.org/10.1016/j.tree.2008.11.003
Boenigk J, Arndt H (2002) Bacterivory by heterotrophic flagellates: community structure and feeding strategies. Antonie Van Leeuwenhoek 81(1–4):465–480
Boettcher B, Barral Y (2013) The cell biology of open and closed mitosis. Nucleus 4(3):160–165
Bohlin K (1897) Studier ofver några slågten af alggruppen Confervales Borzi. Bihang till Kongliga Svenska Vetenskaps-Academiens Handlingar, 23, Afd. III, No 3, 1–56
Bold HC, Wynne MJ (1985) Introduction to the algae: structure and reproduction, 2nd edn. Prentice-Hall, Englewood Cliffs, N.J., p 720
Boltovskoy D, Anderson OR, Correa NM (2017) Radiolaria and Phaeodaria. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 731–763
Booth BC, Marchant HJ (1987) Parmales, a new order of marine chrysophytes, with descriptions of three new genera and seven new species. J Phycol 23:245–260
Borzi A (1889) Botrydiopsis nuovo genere di alghe verdi. Bollettino Della Societá Italiana Di Microbiologia 1:60–70
Borzi A (1895) Studi Algologici. Fasc. II. Palermo, A. Reber
Bouck GB, Ngo H (1996) Cortical structure and function in euglenoids with reference to trypanosomes, ciliates, and dinoflagellates. Int Rev Cytol 169:267–318
Bouck GB (1971) The structure, origin, isolation, and composition of the tubular mastigonemes of the Ochromonas flagellum. J Cell Biol 50:362–384
Bouck GB, Rogalski A, Valaitis A (1978) Surface organization and composition of Euglena. II. Flagellar mastigonemes. J Cell Biol 77(3):805–826
Bourdareau S, Tirichine L, Lombard B, Loew D, Scornet D, Wu Y, Coelho SM, Cock JM (2021) Histone modifications during the life cycle of the brown alga Ectocarpus. Genome Biol 22:12
Bourrelly P (1954) Phylogénie et systématique des Chrysophycees. In: Rapports et Communications de l’Huitième Congrès International de Botanique [Paris], Sect. 17, pp 117–118
Bourrelly P (1957) Recherches sur les Chrysophycées. morphologie, phylogénie, systématique. Revue Algologique Mémoire Hors-Série 1:1–412
Bourrelly P (1965) La classification des Chrysophycées, ses problèmes. Rev Algol 1:56–60
Bourrelly P (1968) Les Algues d’Eau Douce. II. Les Algues jaunes et brunes, p 438. Société Nouvelle des Éditions Boubée, Paris
Bowers HA, Tomas C, Tengs T, Kempton JW, Lewitus AJ, Oldach DW (2006) Raphidophyceae [Chadefaud ex Silva] systematics and rapid identification: Sequence analyses and real-time PCR assays. J Phycol 42:1333–1348
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U et al (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Bown P (ed) (1998) Calcareous nannofossil biostratigraphy. Cambridge, Chapman & Hall. 314. Nature 456:239–244
Braje TJ, Dillehay TD, Erlandson JM, Klein RG, Rick TC (2017) Finding the first Americans. Science 358:592–594
Brakel J, Sibonga RC, Dumilag RV, Montalescot V, Campbell I, Cottier-Cook EJ, Ward G et al (2021) Exploring, harnessing and conserving marine genetic resources towards a sustainable seaweed aquaculture. Plants People Planet 3:337–349
Braun A (1855) Algarum unicellularium genera nova et minus cognita, praemissis observationibus de algis unicellularibus in genere. Auctore Alexandro Braun. Apud W. Engelmann, Lipsiae
Breglia SA, Yubuki N, Leander BS (2013) Ultrastructure and molecular phylogenetic position of Heteronema scaphurum: A eukaryovorous euglenid with a cytoproct. J Eukaryot Microbiol 60(2):107–120
Breglia SA, Yubuki N, Hoppenrath M and Leander BS (2010) Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida). BMC Microbiol 10(1):145
Brett SJ, Perasso L, Wetherbee R (1994) Structure and development of the cryptomonad periplast: a review. Protoplasma 181:106–122
Briand J, Calvayrac R (1980) Paramylon synthesis in heterotrophic and photoheterotrophic Euglena (Euglenophyceae). J Phycol 16(2):234–239
Bricelj VM, Fisher NS, Guckert JB, Chu F-LE (1989) Lipid composition and nutritional value of the brown tide alga Aureococcus anophagefferens. In: Cosper EM, Bricelj VM, Carpenter EJ (eds) Novel Phytoplankton Blooms. Springer, Berlin Heidelberg, Berlin, Heidelberg, pp 85–100
Bricelj VM, Lonsdale DJ (1997) Aureococcus anophagefferens: causes and ecological consequences of brown tides in U.S. mid-Atlantic coastal waters. Limnol Oceanogr 42:1023–1038
Bringloe TT, Starko S, Wade RM, Vieira C, Kawai H, De Clerck O, Cock JM et al (2020a) Phylogeny and evolution of the brown algae. Crit Rev Plant Sci 39:281–321
Bringloe TT, Verbruggen H, Saunders GW (2020b) Unique biodiversity in Arctic marine forests is shaped by diverse recolonization pathways and far northern glacial refugia. Proc Natl Acad Sci 117:22590–22596
Briones-Fourzán P, Lozano-Álvarez E (2001) The importance of Lobophora variegata (Phaeophyta: Dictyotales) as a habitat for small juveniles of Panulirus argus (Decapoda: Palinuridae) in a tropical reef lagoon. Bull Mar Sci 68:201–219
Brosnan S, Brown PJ, Farmer MA, Triemer RE (2005) Morphological separation of the euglenid genera Trachelomonas and Strombomonas (Euglenophyta) based on lorica development and posterior strip reduction. J Phycol 41(3):590–605
Broughton MJ, Howe CJ, Hiller RG (2006) Distinctive organization of genes for light- harvesting proteins in the cryptophyte algal Rhodomonas. Gene 369:72–79
Brown HP, Cox A (1954) An electron microscope study of protozoan flagella. Am Midl Nat 52:106–117
Brown JM, Labonté JM, Brown J, Record NR, Poulton NJ, Sieracki ME, Logares R, Stepanauskas R (2020) Single cell genomics reveals viruses consumed by marine protists. Front Microbiol 11:524828
Brown JW, Sorhannus U (2010) A molecular genetic timescale for the diversification of autotrophic Stramenopiles (Ochrophyta): substantive underestimation of putative fossil ages. PLoS ONE 5:e12759
Brown MR, Jeffrey SW, Garland CD (1989) Nutritional aspects of microalgae used in mariculture: a literature review, p 44. Hobart, Tasmania
Brown MR, Jeffrey SW, Volkmann JK, Dunstan GA (1997) Nutritional properties of microalgae for mariculture. Aquaculture 151:315–331
Brugerolle G (2002) Cryptophagus subtilis: a new parasite of cryptophytes affiliated with the Perkinsozoa lineage. Eur J Protistol 37:379–390
Brugerolle G (2003) Apicomplexan parasite Cryptophagus renamed Rastrimonas gen. Nov Eur J Protistol 39:101
Büdel B, Darienko T, Deutschewitz K, Dojani S, Friedl T, Mohr KI, Salisch M, Reisser W, Weber B (2009) Southern African biological soil crusts are ubiquitous and highly diverse in drylands, being restricted by rainfall frequency. Microb Ecol 57:229–247
Buetow DE (1968) Morphology and ultrastructure of Euglena. Biol Euglena 1:109–184
Buetow DE (2011) Euglena, In Encyclopedia of Life Sciences
Buggeln RG (1974) Negative phototropism of the haptera of Alaria esculenta (Laminariales). J Phycol 10:80–82
Burki F, Kaplan M, Tikhonenkov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ (2016) Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proc R Soc B 283:20152802
Burki F, Okamoto N, Pombert JF, Keeling PJ (2012) The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc R Soc B 279:2246–2254
Burki F, Roger AJ, Brown MW, Simpson AGB (2020) The new tree of Eukaryotes. Trends Ecol Evol 35:43–55
Burki F, Sandin MM, Jamy M (2021) Diversity and ecology of protists revealed by metabarcoding. Curr Biol 31:R1267–R1280
Burki F, Shalchian-Tabrizi K, Minge M, Skjæveland Å, Nikolaev SI, Jakobsen KS, Pawlowski J (2007) Phylogenomics reshuffles the eukaryotic supergroups. PLoS ONE 2(8):e790
Burkill PH, Mantoura RFC, Llewellyn CA, Owens NJP (1987) Microzooplankton grazing and selectivity of phytoplankton in coastal waters. Mar Biol 93:581–590
Busse I, Preisfeld A (2002a). Phylogenetic position of Rhynchopus sp. and Diplonema ambulator as indicated by analyses of euglenozoan small subunit ribosomal DNA. Gene 284(1–2):83–91
Busse I, Preisfeld A (2002b) Unusually expanded SSU ribosomal DNA of primary osmotrophic euglenids: molecular evolution and phylogenetic inference. J Mol Evol 55(6):757–767
Busse I, Preisfeld A (2003) First evidence of a group I intron among euglenozoans discovered in the SSU rDNA of Ploeotia costata (Euglenozoa). Protist 154:57–69
Busse I, Patterson DJ, Preisfeld A (2003) Phylogeny of phagotrophic euglenids (Euglenozoa): a molecular approach based on culture material and environmental samples. J Phycol 39:828–836
Butcher RW (1967) An introductory account of the smaller algae of British Coastal waters. Part IV: Cryptophyceae. Ministry of Agriculture, Fisheries and Food. HMSO, London
Bütschli O (1884) Dr. HG Bronn's Klassen und Ordnungen des Thier‐Reichs, Vol 1 Abt. II Mastigophora
Bütschli O (1883–1887) Mastigophora. In HG Bronn's Klassen und Ordnungen des Thierreichs, Band 1, 2. Abteilung. C.F. Winter’sche Verlagshandlung, Leipzig und Heidelberg
Butterfield NJ (2004) A vaucheriacean alga from the middle Neoproterozoic of Spitsbergen: implications for the evolution of Proterozoic eukaryotes and the Cambrian explosion. Paleobiology 30:231–252
Calderon-Saenz E, Schnetter R (1989) Morphology, biology and systematics of Cryptochlora perforans (Chlorarachniophyta), a phagotropic marine alga. Plant Syst Evol 163:165–176
Calkins GN (1933) The Biology of the Protozoa, p 607 (Edn. 2)
Calvert SE (1977) Mineralogy of silica phases in deep-sea cherts and porcelanites. Philosophical transactions of the royal society of London. Series a, Mathem Phy Sci 286:239–252
Camacho A (2006) On the occurrence and ecological features of deep chlorophyll maxima (DCM) in Spanish stratified lakes. Limnetica 25:453–478
Campbell C, Vitt DH, Halsey LA, Campbell ID, Thormann MN, Bayley SE (2000) Net primary production and standing biomass in northern continental wetlands. Northern Forestry Centre Information Report NOX -X-369, p 57. Ottawa: Canadian Forest Service
Cann JP, Pennick NC (1986). Observations on Petalomonas cantuscygni, n. sp., a new halo-tolerant strain. Archiv für Protistenkunde 132(1–2):63–71
Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ (2017) Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat Rev Microbiol 15(1):6–20
Caron DA, Porter KG, Sanders RW (1990) Carbon, nitrogen, and phosphorus budgets for the mixotrophic phytoflagellate Poterioochromonas malhamensis (Chrysophyceae) during bacterial ingestion. Limnol Oceanogr 35:433–443
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G et al. (2018) A global ocean atlas of eukaryotic genes. Nat Commun 9
Carter N (1937) New or interesting algae from brackish water. Arch Protistenk 90:1–68
Casiot C, Bruneel O, Personne JC, Leblanc M, Elbaz-Poulichet F (2004) Arsenic oxidation and bioaccumulation by the acidophilic protozoan, Euglena mutabilis, in acid mine drainage (Carnoulès, France). Sci Total Environ 320(2–3):259–267
Casper-Lindley C, Björkman O (1998) Fluorescence quenching in four unicellular algae with different light-harvesting and xanthophyll-cycle pigments. Photosynth Res 56(3):277–289
Cavalier-Smith T (1981) Eukaryotic kingdoms: Seven or nine? BioSystems 14:461–481
Cavalier-Smith T (1986) The kingdom Chromista: origin and systematics. In Round FE, Chapman DJ (eds), Progress in Phycological Research, 4:309–347
Cavalier-Smith T (1993) Kingdom protozoa and its 18 phyla. Microbiol Rev 57(4):953–994
Cavalier-Smith T (1998) A revised six-kingdom system of life. Biol Rev 73:203–266
Cavalier-Smith T (1999) Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46:347–366
Cavalier-Smith T (2016) Higher classification and phylogeny of Euglenozoa. Eur J Protistol 56:250–276
Cavalier-Smith T (2017) Euglenoid pellicle morphogenesis and evolution in light of comparative ultrastructure and trypanosomatid biology: Semi-conservative microtubule/strip duplication, strip shaping and transformation. Eur J Protistol 61:137–179
Cavalier-Smith T, Chao EE (1996) 18S rRNA sequence of Heterosigma carterae (Raphidophyceae), and the phylogeny of heterokont algae (Ochrophyta). Phycologia 35:500–510
Cavalier-Smith T, Chao EE, Lewis R (2015) Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista. Mol Phylogenet Evol 93:331–362
Cavalier-Smith T, Couch JA, Thorsteinsen KE, Gilson P, Deane JA, Hill DRA, McFadden GI (1996) Cryptomonad nuclear and nucleomorph 18S rRNA phylogeny. Eur J Phycol 31:315–328
Cavalier-Smith T (1978) The evolutionary origin and phylogeny of microtubules, mitotic spindles and eukaryote flagella. Biosystems 10:93–114
Cavalier-Smith T, Chao EE, Allsopp MTEP (1995) Ribosomal RNA evidence for chloroplast loss within Heterokonta: pedinellid relationships and a revised classification of Ochristan algae. Arch Protistenk 145:209–220
Celis-Plá PSM, Martínez B, Korbee N, Hall-Spencer JM, Figueroa FL (2017) Ecophysiological responses to elevated CO2 and temperature in Cystoseira tamariscifolia (Phaeophyceae). Clim Change 142:67–81
Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Maréchal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM (2018) Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids. BMC Biol 16:137
Cerino F, Zingone A (2006) A survey of cryptomonad diversity and seasonality at a coastal Mediterranean site. Eur J Phycol 41:363–378
Chadefaud M (1950) Les cellules nageuses des Algues dans l’embranchement des Chromophycées. Comptes Rendus De L’academie Des Sciences, Paris 231:788–790
Chadefaud M (1960) Traité de Botanique Systématique. Tome I. Les Végétaux non Vasculaires, p 1016. Cryptogamie. Masson et Cie Editeurs, Paris
Chang FH, McVeagh M, Gall M, Smith P (2012) Chattonella globosa is a member of Dictyochophyceae: reassignment to Vicicitus gen. nov., based on molecular phylogeny, pigment composition, morphology and life history. Phycologia 51:403–420
Chang FH, Sutherland J Bradford-Grieve J (2017) Taxonomic revision of Dictyochales (Dictyochophyceae) based on morphological, ultrastructural, biochemical and molecular data: taxonomic revision of Dictyochales. Phycol Res 65:235–247
Chang FH, Sutherland JE, McVeagh M, Gall M (2014) Molecular phylogeny, pigment composition, toxicology and life history of Pseudochattonella cf. verruculosa (Class Dictyochophyceae) from Wellington Harbour, New Zealand. Harmful Algae 34:42–55
Chapman ARO (1974) The ecology of macroscopic marine algae. Annu Rev Ecol Syst 5:65–80
Charrier B, Le Bail A, de Reviers B (2012) Plant Proteus: brown algal morphological plasticity and underlying developmental mechanisms. Trends Plant Sci 17:468–477
Chen LC-M, McLachlan J, Craigie JS (1974) The fine structure of the marine chrysophycean alga Phaeosaccion collinsii. Can J Bot 52:1621–1624
Chepurnov VA, Mann DG, Sabbe K, Vyverman W (2004) Experimental studies on sexual reproduction in diatoms. In International Review of Cytology, pp 91–154. Elsevier
Cho GY, Lee SH, Boo SM (2004) A new brown algal order, Ishigeales (Phaeophyceae), established on the basis of plastid protein-coding rbcL, psaA, and psbA region comparisons. J Phycol 40:921–936
Christensen T (1962) Alger. In: Böcher TW, Lange MC, Sørensen T (eds) Botanik, vol 2. Systematisk Botanik Number 2. Copenhagen, Denmark, Munksgaard, pp 1–178
Cienkowsky L (1870) Über Palmellaceen und einige Flagellaten. Arch Mikrosk Anat 6:421–438
Ciugulea I, Triemer RE (2010) Color atlas of photosynthetic euglenoids. Michigan State University Press
Clay BL, Kugrens P (1999a) Description and ultrastructure of Kathablepharis tenuis sp. nov. and K. obesa sp. Nov. – Two new freshwater kathablepharids (Kathablepharididae) from Colorado and Wyoming. Eur J Protistol 35:435–447
Clay BL, Kugrens P (1999b) Systematics of the enigmatic kathablepharids, Including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera comb. Nov Protist 150:43–59
Clay BL, Kugrens P, Lee RE (1999) A revised classification of the Cryptophyta. Bot J Linn Soc 131:131–151
Clayton MN, Ashburner CM (1994) Secretion of phenolic bodies following fertilisation in Durvillaea potatorum (Durvillaeales, Phaeophyta). Eur J Phycol 29:1–9
Cleve PT, Grunow A (1880) Beiträge zur Kenntniss der arctischen Diatomeen. Kongliga Svenska Vetenskaps-Akademiens Handlingar 17:1–121
Cock JM, Liu F, Duan D, Bourdareau S, Lipinska AP, Coelho SM, Tarver JE (2017) Rapid evolution of microRNA loci in the brown algae. Genome Biol Evol 9:740–749. https://doi.org/10.1093/gbe/evx038
Cock JM, Sterck L, Ahmed S, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Arun A, Aury J-M, Badger JH, Beszter B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Wincker P (2012) The Ectocarpus genome and brown algal genomics. In Advances in Botanical Research, pp 141–184. Elsevier
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury J-M, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CMM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P (2010) The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465:617–621
Coelho SM, Mignerot L, Cock JM (2019) Origin and evolution of sex-determination systems in the brown algae. New Phytol 222:1751–1756
Cole GT, Wynne MJ (1974) Endocytosis of Microcystis aeruginosa by Ochromonas danica. J Phycol 10:397–410
Coleman MA, Minne AJP, Vranken S, Wernberg T (2020) Genetic tropicalisation following a marine heatwave. Sci Rep 10
Collini E, Wong CY, Wilk KE, Curmi PMG, Brumer P, Scholes GD (2010) Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature. Nat Lett 463:644–648
Copertino DW, Hallick RB (1993) Group II and group III introns of twintrons: potential relationships with nuclear pre-mRNA introns. Trends Biochem Sci 18(12):467–471
Corbella M, Cupellini L, Lipparini F, Scholes GD, Curutchet C (2019) Spectral variability in phycocyanin cryptophyte antenna complexes is controlled by changes in the α polypeptide chains. ChemPhotoChem 3:945–956
Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M et al (2017) Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol 214:219–232
Cornwall CE, Revill, AT, Hall-Spencer JM, Milazzo,M, Raven JA, Hurd CL (2017) Inorganic carbon physiology underpins macroalgal responses to elevated CO2. Sci Rep 7
Correns C (1892) Über eine neue braune Süsswasseralge, Naegeliella flagellifera nov. gen. et spec. Berichte Der Deutsche Botanischen Gesellschaft 10:629–636
Cosenza VA, Navarro DA, Ponce NMA, Stortz CA (2017) Seaweed polysaccharides: structure and applications. In: Goyanes SN, D’Accorso NB (eds) Industrial applications of renewable biomass products. Springer International Publishing, Cham, pp 75–116
Cox E (2015) Coscinodiscophyceae, emdiophyceae, fragilariophyceae, bacillariophyceae (Diatoms). Syllabus of Plant Families. Adolf Engler’s Syllabus der Pflanzenfamilien Part 2/1, pp 64–103
Craig Bailey J, Bidigare RR, Christensen SJ, Andersen RA (1998) Phaeothamniophyceae classis nova: a new lineage of Chromophytes based upon photosynthetic pigments, rbcL sequence analysis and ultrastructure. Protist 149:245–263
Croft MT, Warren MJ, Smith AG (2006) Algae need their vitamins. Eukaryot Cell 5:1175–1183
Cronberg G (2005) The life cycle of Gonyostomum semen (Raphidophyceae). Phycologia 44:285–293
Cryan AE, Benes KM, Gillis B, Ramsay-Newton C, Perini V, Wynne MJ (2015) Growth, reproduction, and senescence of the epiphytic marine alga Phaeosaccion collinsii Farlow (Ochrophyta, Phaeothamniales) at its type locality in Nahant, Massachusetts, USA. Botanica Marina, p 58
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJM, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K-I, Kim E, Kořený L, Kroth PG, Liu Y, Malik S-B, Maier UG, McRose D, Mock T, Neilson JAD, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM (2012) Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature 492:59–65. https://doi.org/10.1038/nature11681
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messie M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ (2010) Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci USA 107:14679–14684
Czerwik-Marcinkowska J, Mrozinska T (2009) Epilithic algae from caves of the Krakowsko- Czestochowska upland (Southern Poland). Acta Societatis Botanicorum Poloniae 78:301–309
Da Cunha AM (1913) Contribuição para o conhecimento da fauna de Protozoarios do Brazil. Mem Inst Oswaldo Cruz 5(2):101–122
da Silva AF, Lourenço SO, Chaloub RM (2009) Effects of nitrogen starvation on the photosynthetic physiology of a tropical marine microalga Rhodomonas sp. (Cryptophyceae). Aquat Bot 91:291–297
Dabbagh N, Preisfeld A (2017) The chloroplast genome of Euglena mutabilis—Cluster arrangement, intron analysis, and intrageneric trends. J Eukaryotic Microbiol 64(1):31–44
Dabbagh N, Bennett MS, Triemer RE, Preisfeld A (2017) Chloroplast genome expansion by intron multiplication in the basal psychrophilic euglenoid Eutreptiella pomquetensis. PeerJ 5:e3725
Darwin C (1909) The Voyage of the Beagle. The Harvard Classics, Vol 29. New York, USA: P.F. Collier & Son Company
Daugbjerg N (1996) Mesopedinella arctica gen. et sp. nov. (Pedinellales, Dictyochophyceae) I: fine structure of a new marine phytofiagellate from Arctic Canada. Phycologia 35:435–445
Daugbjerg N, Guillou L (2001) Phylogenetic analyses of Bolidophyceae (Heterokontophyta) using rbcL gene sequences support their sister group relationship to diatoms. Phycologia 40:153–161
Daugbjerg N, Norlin A, Lovejoy C (2018) Baffinella frigidus gen. et sp. nov. (Baffinellaceae fam. nov., Cryptophyceae) from Baffin Bay: Morphology, pigment profile, phylogeny, and growth rate response to three abiotic factors. J Phycol 54:665–680
Dawson NS, Walne PL (1994) Evolutionary trends in euglenoids. Archiv für Protistenkunde 144(3):221–225
Dayton PK (1985) Ecology of kelp communities. Annu Rev Ecol Syst 16:215–245
de Lamarck JPBA, De Candolle AP (1805) Flore française Vol. 2, 3rd edn. Agasse, Paris
De Mattos Bicudo CE, Ferragut C, Massagardi MR (2009) Cryptophyceae population dynamics in an oligo-mesotrophic reservoir (Ninféias pond) in São Paulo, southeast Brazil. Hoehnea 36:99–111
De Souza CPC, Osmani SA (2007) Mitosis, not just open or closed. Eukaryot Cell 6(9):1521–1527
De Tommasi E, Gielis J, Rogato A (2017) Diatom frustule morphogenesis and function: a multidisciplinary survey. Mar Genomics 35:1–18
De Toni JB (1895) Sylloge algarum, Vol 3. Fucoideae (privately published) Padova, pp xvi-638
De Vargas C, Aubry M-P, Probert I, Young J (2007) Origin and evolution of Coccolithophores: from coastal hunters to oceanic farmers. In Falkowski PG, Knoll AH (eds) Evolution of primary producers in the Sea. Academic Press (Elsevier Inc.), pp 251–285
de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E et al (2015) Eukaryotic plankton diversity in the sunlit ocean. Science 348:1261605
Deane JA, Hill DRA, Brett SJ, McFadden GI (1998) Hanusia phi gen. et sp. nov. (Cryptophyceae): Characterization of ‘Cryptomonas sp. Φ ’ Eur J Phycol 33:149–154
Deason TR (1971) The fine structure of sporogenesis in the xantophyceaen alga Pseudobumilleriopsis pyrenoidosa. J Phycol 7:101–107
Debroas D, Domaizon I, Humbert JF, Jardillier L, Lepère C, Oudart A, Taïb N (2017) Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data. FEMS Microb Ecol 93(4):fix023
Deflandre G (1934) Sur les microfossiles d’origine planctonique, conservés à l’état de matière organique dans les silex de la craie. Paris: Comptes Rendus De L’académie Des Sci 199:966–968
Deflandre G (1950) Contribution à l’étude des Silicoflagellidés actuels et fossils. Microscopie 2:72–108, 117–142, 191–210
del Campo J, Massana R (2011) Emerging diversity within chrysophytes, choanoflagellates and bicosoecids based on molecular surveys. Protist 162:435–448
Delmont TO, Gaia M, Hinsinger DD, Frémont P, Vanni C, Fernandez-Guerra A, Eren AM, Kourlaiev A, d'Agata L, Clayssen Q, Villar E, Labadie K, Cruaud C, Poulain J, Da Silva C, Wessner M, Noel B, Aury J (2022) Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics 2(5):100123
Demir-Hilton E, Hutchins DA, Czymmek KJ, Coyne KJ (2012) Description of Viridilobus marinus (gen. et sp. nov.), a new raphidophyte from Delaware’s inland bays. J Phycol 48:1220–1231
Demura M, Noël M-H, Kasai F, Watanabe MM, Kawachi M (2009) Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia 48:518–535
Deniaud-Bouët E, Hardouin K, Potin P, Kloareg B, Hervé C (2017) A review about brown algal cell walls and fucose-containing sulfated polysaccharides: cell wall context, biomedical properties and key research challenges. Carbohyd Polym 175:395–408
Deniaud-Bouët E, Kervarec N, Michel G, Tonon T, Kloareg B, Hervé C (2014) Chemical and enzymatic fractionation of cell walls from Fucales: insights into the structure of the extracellular matrix of brown algae. Ann Bot 114:1203–1216
deNoyelles F, Smith VH, Kastens JH, Bennett L, Lomas JM, Knapp CW, Bergin SP, Dewey SL, Chapin BRK, Graham DW (2016) A 21-year record of vertically migrating subepilimnetic populations of Cryptomonas spp. Inland Waters 6:173–184
Denys L, De Smet W (2010) Epipellis oiketis (Bacillariophyta) on harbor porpoises from the North Sea Channel (Belgium). Polish Botan J 65:175–182
Derelle R, López-García P, Timpano H, Moreira D (2016) A phylogenomic framework to study the diversity and evolution of Stramenopiles (=Heterokonts). Mol Biol Evol 33:2890–2898
Deschamps P, Haferkamp I, Dauvillée D, Hachel S, Steup M, Buléon A, Putaux JL, Colleoni C, d’Hulst C, Plancke C, Gould S, Maier U, Neuhaus HE, Ball S (2006) Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta. Eukaryot Cell 5:954–963
DeYoe HR, Stockwell DA, Bidigare RR, Latasa M, Johnson PW, Hargraves PE, Suttle CA (1997) Description and characterization of the algal species Aureoumbra lagunensis gen. et sp. nov. and referral of Aureoumbra and Aureococcus to the Pelagophyceae. J Phycol 33:1042–1048
Di Franco A, Baurain D, Glöckner G, Melkonian M, Philippe H (2021) Lower statistical support with larger datasets: insights from the Ochrophyta radiation. Molecular Biology and Evolution msab300
Diesing KM (1865) Revision der Prothelminthen. Abtheilung: Mastigophoren. Sitzungsberichte Der Akademie Der Wissenschaften Zu Wien 52:287–401
Dietz C, Ehlers K, Wilhelm C, Gil-Rodriguez MC, Schnetter R (2003) Lotharella polymorpha sp. nov. (Chlorarachniophyta) from the coast of Portugal. Phycologia 42:582–593
Dietz C, Schnetter R (1996) Arrangement of F-actin and microtubules in the pseudopodia of Cryptochlora perforans (Chlorarachniophyta). Protoplasma 193:82–90
Dı́ez B, Pedrós-Alió C, Massana R (2001) Study of genetic diversity of Eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Appl Environ Microbiol 67:2932–2941
Dittami SM, Heesch S, Olsen JL, Collén J (2017) Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae. J Phycol 53:731–745
Dittami SM, Scornet D, Petit J-L, Ségurens B, Da Silva C, Corre E, Dondrup M et al (2009) Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol 10:R66
Dobakova E, Flegontov P, Skalický T, Lukeš J (2015) Unexpectedly streamlined mitochondrial genome of the euglenozoan Euglena gracilis. Genome Biol Evol 7(12):3358–3367
Dobell C (1932) Antony van Leeuwenhoek and his “Little Animals.“ Being Some Account of the Father of Protozoology and Bacteriology and his Multifarious Discoveries in these Disciplines. Collected, Translated, and Edited, from his Printed Works, Unpublished Manuscripts, and Contemporary Records. Published on the 300th Anniversary of his Birth. John Bale, Sons & Danielsson, Ltd, 435
Dobell C (1958) Antony van Leeuwenhoek and his "little animals.". Russell & Russell
Dodge JD (1973) The fine structure of algal cells. Elsevier
Dooijes D, Chaves I, Kieft R, Dirks-Mulder A, Martin W, Borst P (2000) Base J originally found in kinetoplastida is also a minor constituent of nuclear DNA of Euglena gracilis. Nucleic Acids Res 28(16):3017–3021
Dorantes-Aranda JJ, Seger A, Mardones JI, Nichols PD, Hallegraeff GM (2015) Progress in understanding algal bloom-mediated fish kills: the role of superoxide radicals, phycotoxins and fatty acids. PLoS ONE 10:e0133549
Dorrell RG, Bowler C (2017) Secondary plastids of Stramenopiles. In Advances in Botanical Research, pp 57–103. Elsevier
Dorrell RG, Azuma T, Nomura M, Audren de Kerdrel G, Paoli L, Yang S, Bowler C et al (2019) Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc Natl Acad Sci 116:6914–6923
Dorrell RG, Smith AG (2011) Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates. Eukaryot Cell 10(7):856–868
Dorrell RG, Gile G, McCallum G, Méheust R, Bapteste EP, Klinger CM, Brillet-Guéguen L et al. (2017) Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome. eLife 6
Dorrell RG, Villain A, Perez-Lamarque B, Audren de Kerdrel G, McCallum G, Watson AK, Ait-Mohamed O et al (2021) Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes. Proc Natl Acad Sci 118:e2009974118
Douglas S, Zauner S, Fraunholz M, Beaton M, Penny S, Deng L-T, Wu X, Reith M, Cavalier- Smith T, Maier U-G (2001) The highly reduced genome of an enslaved algal nucleus. Nature (London) 410:1091–1096
Douglas SE, Murphy CA, Spencer DF, Gray MW (1991) Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes. Nature 350:148–151
Douglas SE, Penny SL (1999) The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol 48:236–244
Doust AB, van Stokkum IHM, Larsen DS, Wilk KE, Curmi PMG, van Grondelle R, Scholes GD (2005) Mediation of ultrafast light-harvesting by a central dimer in phycoerythrin 545 studied by transient absorption and global analysis. J Phys Chem 109:14219–14226
Doust AB, Wilk K, Curmi PMG, Scholes GD (2006) The photophysics of cryptophyte light- harvesting. J Photochem Photobiol, A 184:1–17
Draget KI, Smidsrød O, Skjåk-Bræk G (2005) Alginates from algae. In Steinbüchel A, Rhee SK (eds) Polysaccharides and polyamides in the food industry: properties, production, and patents. Wiley, Winheim
Dragoş N, Péterfi LŞ, Popescu C (1997) Comparative fine structure of pellicular cytoskeleton in Euglena Ehrenberg. Arch Protistenk 148(3):277–285
Drobnitch ST, Jensen KH, Prentice P, Pittermann J (2015) Convergent evolution of vascular optimization in kelp (Laminariales). Proc Royal Soc b: Biol Sci 282:20151667
Ducreux G (1984) Experimental modification of the morphogenetic behavior of the isolated sub-apical cell of the apex of Sphacelaria cirrosa (Phaeophyceae). J Phycol 20:447–454
Duff KE, Zeeb BA, Dumont HJ (1995) Atlas of chrysophycean cysts. Springer, Netherlands, Dordrecht
Duggins DO, Simenstad CA, Estes JA (1989) Magnification of secondary production by kelp detritus in coastal marine ecosystems. Science 245:170–173
Dujardin F (1841) Histoire naturelle des Zoophytes-infusoires. Roret, Paris, p 684
Dunahay TG, Jarvis EE, Roessler PG (1995) Genetic transformation of the diatoms Cyclotella cryptica and Navicula saprophila. J Phycol 31:1004–1012
Durmaz Y (2007) Vitamin E (α-tocopherol) production by the marine microalgae Nannochloropsis oculata (Eustigmatophyceae) in nitrogen limitation. Aquaculture 272:717–722
Durnford DG, Deane JA, Tan S, McFadden GI, Gantt E, Green B (1999) A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution. J Mol Evol 48:59–68
Ebenezer TE, Carrington M, Lebert M, Kelly S, Field MC (2017) Euglena gracilis genome and transcriptome: organelles, nuclear genome assembly strategies and initial features. Euglena: biochemistry, cell and molecular biology. Springer, Cham, pp 125–140
Ebenezer TE, Zoltner M, Burrell A, Nenarokova A, Novák Vanclová AMG, Prasad B, Soukal P, Santana-Molina C, O’Neill E, Nankissoor NN, Vadakedath N, Daiker V, Obado S, Silva-Pereira S, Jackson AP, Devos DO, Lukeŝ J, Lebert M, Vaughan S, Hampl V, Carrington M, Ginger ML, Dacks JB, Kelly S, Field MC (2019) Transcriptome, proteome and draft genome of Euglena gracilis. BMC Microbiol 17(1):11
Edvardsen B, Eikrem W, Shalchian-Tabrizi K, Riisberg I, Johnsen G, Naustvoll L, Throndsen J (2007) Verrucophora farcimen gen. et sp. nov. (Dictyochophyceae, Heterokonta) - a bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway 1. J Phycol 43:1054–1070
Egeland ES (2016) Carotenoids. In: Borowitzka MA, Beardall J, Raven JA (eds) The physiology of microalgae. Springer International Publishing, Cham, pp 507–563
Ehrenberg CG (1832) Über die Entwickelung und Lebensdauer der Infusionsthiere; nebst ferneren Beiträgen zu einer Vergleichung ihrer organischen systeme. Abhandlungen Der Königlichen Akademie Der Wissenschaften Berlin, Physikalische Klasse 1831:1–154
Ehrenberg C (1834). Dritter Beitrag zur Erkenntniss grosser Organisation in der Richtung des kleinsten Raumes. Berlin: Konigl Akad d Wiss 1833:145–336
Ehrenberg CG (1838) Die Infusionsthierchen als vollkommene Organismen. Ein Blick in das tiefere organische Leben der Natur
Ehrenberg CG (1839) Über die Bildung der Kreidefelsen und des Kreidemergels durch unsichtbare Organismen. Abhandlungen Der Königlichen Akademie Der Wissenschaften Zu Berlin 1838:59–147
Ehrenberg CG, ed (1831) Symbolae physicae seu icones et descriptiones animalium evertebratorum sepositis insectis quae ex itinere per Africanum Borealem et Asiam Occidentalem Friderici Guilelmi Hemprich et Christiani Godofredi Ehrenberg medicinae et chirurgiae doctorum studio novae aut illustratae redierunt. Mittler, Berlin
Eikrem W, Medlin LK, Henderiks J, Rokitta S, Rost B, Probert I, Throndsen J, Edvardsen B (2017) Haptophyta. In Archibald JM, Simpson AGB, Slomovits CH (eds) Handbook of the Protists 2nd ed, pp 893–963
Eikrem W, Romari K, Latasa M, Gall FL, Throndsen J, Vaulot D (2004) Florenciella parvula gen. et sp. nov. (Dictyochophyceae, Heterokontophyta), a small flagellate isolated from the English Channel. Phycologia 43:658–668
Ejsmond MJ, Blackburn N, Fridolfsson E, Haecky P, Andersson A, Casini M, Belgrano A, Hylander S (2019) Modeling vitamin B1 transfer to consumers in the aquatic food web. Sci Rep 9:10045
Eliáš M, Amaral R, Fawley KP, Fawley MW, Němcová Y, Neustupa J, Přibyl P et al (2017) Eustigmatophyceae. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 367–406
Erata M, Kubota M, Takahashi T, Inouye I, Watanabe M (1995) Ultrastructure and phototactic action spectra of two genera of cryptophyte flagellate algae, Cryptomonas and Chroomonas. Protoplasma 188:258–266
Erlandson JM, Braje TJ, Gill KM, Graham MH (2015) Ecology of the kelp highway: did marine resources facilitate human dispersal from Northeast Asia to the Americas? J Island Coastal Archaeol 10:392–411
Esson HJ, Leander BS (2008) Novel pellicle surface patterns on Euglena obtusa (Euglenophyta) from the marine benthic environment: implications for pellicle development and evolution. J Phycol 44(1):132–141
Esson HJ, Leander BS (2006) A model for the morphogenesis of strip reduction patterns in phototrophic euglenids: evidence for heterochrony in pellicle evolution. Evol Dev 8(4):378–388
Estes JA, Burdin A, Doak DF (2016) Sea otters, kelp forests, and the extinction of Steller’s sea cow. Proc Natl Acad Sci 113:880–885
Ettl H, Gärtner G (1995) Syllabus der Boden-, Luft- und Flechtenalgen, p 721. Stuttgart: Gustav Fischer
Ettl H (1978) Xanthophyceae, part 4. In Ettl H, Gerloff HJ, Heynig H (eds) Süsswasserflora von Mitteleuropa, Bd. 3, 1. Teil, Gustav Fischer Verlag, Stuttgart, Germany
Evans KM, Chepurnov VA, Sluiman HJ, Thomas, SJ, Spears BM, Mann DG (2009) Highly differentiated populations of the freshwater diatom Sellaphora capitata suggest limited dispersal and opportunities for allopatric speciation. Protist 160(3):386–396
Ewerts H, Barnard S, Swanepoel A (2016) Laboratory-scale simulations with hydrated lime and organic polymer to evaluate the effect of pre-chlorination on motile Ceratium hirundinella cells during conventional water treatment. Water SA 42:270–278
Falciatore A, Mock T (2022) The molecular life of diatoms, pp XXIII, 808. Cham, Springer International Publishing. https://doi.org/10.1007/978-3-030-92499-7
Falk H (1967) Zum Feinbau von Botrydium granulatum Grev. (Xanthophyceae). Archiv für Mikrobiologie 58:212–227
Falkowski PG, Knoll AH (eds) (2007) Evolution of primary producers in the sea. Elsevier Academic Press, Amsterdam; Boston, p 441
Fan X, Han W, Teng L, Jiang P, Zhang X, Xu D, Li C, Pellegrini M, Wu C, Wang Y, Kaczurowski MJS, Lin X, Tirichine L, Mock T, Ye N (2020) Single-base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants. New Phytol 225:234–249
FAO (2020) FAO yearbook. Fishery and aquaculture statistics 2018. FAO, Roma, Italy
Farlow WG (1882) Notes on New England Algae. Bull Torrey Bot Club 9:65–68
Farmer MA (2011) Euglenozoa. In: Schaechter M (ed) Eucaryotic Microbes. Academic Press, pp 311–321
Faust MA, Gantt E (1973) Effect of light intensity and glycerol on the growth, pigment composition, and ultrastructure of Chroomonas sp. J Phycol 9:489–495
Fawley MW, Fawley KP (2017) Rediscovery of Tetraëdriella subglobosa Pascher, a member of the Eustigmatophyceae. Fottea 17:96–102
Fawley MW, Jameson I, Fawley KP (2015) The phylogeny of the genus Nannochloropsis (Monodopsidaceae, Eustigmatophyceae), with descriptions of N. australis sp. nov. and Microchloropsis gen. nov. Phycologia 54:545–552
Fawley KP, Eliáš M, Fawley MW (2014) The diversity and phylogeny of the commercially important algal class Eustigmatophyceae, including the new clade Goniochloridales. J Appl Phycol 26:1773–1782
Fawley MW, Fawley KP, Cahoon AB (2021) Finding needles in a haystack—Extensive diversity in the Eustigmatophyceae revealed by community metabarcode analysis targeting the rbcL gene using lineage-directed primers. J Phycol 57:1636–1647
Ferreira M, Coutinho P, Seixas P, Fábregas J, Otero A (2009) Enriching rotifers with “premium” microalgae, Nannochloropsis gaditana. Mar Biotechnol 11:585–595
Fensome RA, Taylor FJR, Norris G, Sarjeant WAS, Wharton DI, Williams GL (1993) A classification of living and fossil dinoflagellates. American Museum of Natural History, Micropaleontology special publication number 7:1–351
Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary production of the biosphere: integrating terrestrial and oceanic components. Science 281:237–240. https://doi.org/10.1126/science.281.5374.237
Figueroa RI, Rengefors K (2006) Life cycle and sexuality of the freshwater raphidophyte Gonyostomum semen (Raphidophyceae). J Phycol 42:859–871
Filbee-Dexter K, Wernberg T (2018) Rise of turfs: a new battlefront for globally declining kelp forests. Bioscience 68:64–76
Findenig BM, Chatzinotas A, Boenigk J (2010) Taxonomic and ecological characterization of stomatocysts of Spumella-like flagellates (Chrysophyceae). J Phycol 46:868–881
Finkel ZV (2016) Silicification in the microalgae. In: Borowitzka MA, Beardall J, Raven JA (eds) The physiology of microalgae. Springer International Publishing, Cham, pp 289–300
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA (2010) Phytoplankton in a changing world: cell size and elemental stoichiometry. J Plankton Res 32:119–137
Fiorendino JM, Smith JL, Campbell L (2020) Growth response of Dinophysis, Mesodinium, and Teleaulax cultures to temperature, irradiance, and salinity. Harmful Algae 98:101896
Firsova AD, Kuzmina AE, Tomberg IV, Potemkina TG, Likhoshway YE (2008) Seasonal dynamics of chrysophyte stomatocyst formation in the plankton of Southern Baikal. Biol Bull 35(5):507–514
Fitton JH (2011) Therapies from fucoidan; multifunctional marine polymers. Mar Drugs 9:1731–1760
Fleming LE, Kirkpatrick B, Backer LC, Walsh CJ, Nierenberg K, Clark J, Reich A, Hollenbeck J, Benson J, Cheng YS, Naar J, Pierce R, Bourdelais AJ, Abraham WM, Kirkpatrick G, Zaias J, Wanner A, Mendes E, Gaden DG (2011) Review of Florida red tide and human health effects. Harmful Algae 10:224–233
Flöthe CR, Molis M, John U (2014) Induced resistance to periwinkle grazing in the brown seaweed Fucus vesiculosus (Phaeophyceae): molecular insights and seaweed-mediated effects on herbivore interactions. J Phycol 50:564–576
Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T (2016). Benthic protists: the under-charted majority. FEMS Microb Ecol 92(8):fiw120
Forster RM, Dring MJ (1994) Influence of blue light on the photosynthetic capacity of marine plants from different taxonomic, ecological and morphological groups. Eur J Phycol 29:21–27
Foster KW, Smyth RD (1980) Light Antennas in phototactic algae. Microbiol Rev 44:572–630
Fott B (1959) Zur Frage der Sexualität bei den Chrysomonaden. Nova Hedwigia 1:115–129
Fott B (1971) Algenkunde. Gustav Fischer Verlag Jena, p 581
Fraser CI, Nikula R, Spencer HG, Waters JM (2009) Kelp genes reveal effects of subantarctic sea ice during the Last Glacial Maximum. Proc Natl Acad Sci 106:3249–3253
Fritsch FE (1935) The structure and reproduction of the algae, vol 1. Cambridge University Press, Cambridge, UK
Froehlich HE, Afflerbach JC, Frazier M, Halpern BS (2019) Blue growth potential to mitigate climate change through seaweed offsetting. Curr Biol 29:3087-3093.e3
Frost T, Graham L, Elias J, Haase M, Kretchmer D, Kranzfelder J (1997) A yellow-green algal symbiont in the freshwater sponge, corvomeyenia everetti: convergent evolution of symbiotic associations. Freshw Biol 38:395–399
Fry WL, Banks HP (1955) Three new genera of algae from the upper devonian of New York. J Paleontol 29:37–44
Fu G, Nagasato C, Yamagishi T, Kawai H, Okuda K, Takao Y, Horiguchi T et al (2016) Ubiquitous distribution of helmchrome in phototactic swarmers of the stramenopiles. Protoplasma 253:929–941
Fukuda S, Iwamoto K, Atsumi M, Yokoyama A, Nakayama T, Ishida K, Inouye I et al (2014) Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J Plant Res 127:79–89
Fukuda Y, Suzaki T (2015) Unusual features of dinokaryon, the enigmatic nucleus of dinoflagellates. In Marine Protists: Diversity and Dynamics. Ohtsuka S, Suzaki T, Horiguchi T, Suzuki N,Not F (eds) Tokyo: Springer Japan, pp 23–45. https://doi.org/10.1007/978-4-431-55130-0_2
Fulton CJ, Abesamis RA, Berkström C, Depczynski M, Graham NAJ, Holmes TH, Kulbicki M et al (2019) Form and function of tropical macroalgal reefs in the Anthropocene. Funct Ecol 33:989–999
Gabrielson PW, Lindstrom SC (2018) Keys to the seaweeds and seagrasses of southeast Alaska, British Columbia, Washington, and Oregon. Phycological Contribution 9, Publisher. Lindstrom, University of British Columbia, p 180
Gall EA, Yann L, Asensi A, Marie D, Kloareg B (1996) Parthenogenesis and apospory in the Laminariales: A flow cytometry analysis. Eur J Phycol 31:369–380
Gantt E (1971) Micromorphology of the periplast of Chroomonas sp. (Cryptophyceae). J Phycol 7:177–184
Gantt E, Edwards MR, Provasoli L (1971) Chloroplast structure of the Cryptophyceae. J Cell Biol 48(2):280–290
Gao K, Beardall J, Häder D-P, Hall-Spencer JM, Gao G, Hutchins DA (2019) Effects of ocean acidification on marine photosynthetic organisms under the concurrent influences of warming, UV radiation, and deoxygenation. Front Marine Sci 6
Garcia-Cuetos L, Moestrup Ø, Hansen PJ, Daugbjerg N (2010) The toxic dinoflagellate Dinophysis acuminata harbors permanent chloroplasts of cryptomonad origin, not kleptochloroplasts. Harmful Algae 9(1):25–38
Gasol JM, García-Cantizano J, Massana R, Guerrero R, Pedrós-Alió C (1993) Physiological ecology of a metalimnetic Cryptomonas population: relationships to light, sulfide and nutrients. J Plankton Res 15:255–275
Gast RJ, Moran DM, Dennett MR, Caron DA (2007) Kleptoplasty in an Antarctic dinoflagellate: caught in evolutionary transition? Environ Microbiol 9:39–45. https://doi.org/10.1111/j.1462-2920.2006.01109.x
Gattuso J-P, Gentili B, Duarte CM, Kleypas JA, Middelburg JJ, Antoine D (2006) Light availability in the coastal ocean: impact on the distribution of benthic photosynthetic organisms and their contribution to primary production. Biogeosciences 3:489–513
Gavelis GS, White III RA, Suttle CA, Keeling PJ, Leander PS (2015) Single cell transcriptomics using spliced leader PCR: evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates. BMC Genomics 16:528
Gaylord B, Reed DC, Washburn L, Raimondi PT (2004) Physical-biological coupling in spore dispersal of kelp forest macroalgae. J Mar Syst 49:19–39
Gayral P, Billard C (1977a) Chrysophycées et Haptophycées des côtes franç̧aises: Mise au point systématique et nouvelles observations sur Ruttnera chadefaudii Bourrelly et Magne (Haptophycées). Bulletin De La Société Phycologique De France 22:135–149
Gayral P, Haas C (1969) Étude comparée des genres Chrysomeris Carter et Giraudyopsis P Dang. position systématique des Chrysomeridaceae (Chrysophyceae). Revue Générale De Botanie 76:659–666
Gayral MP, Billard MC (1977b) Synopsis du nouvel ordre des Sarcinochrysidales (Chrysophyceae). Taxon 26:241–245
Geisen M, Billard C, Broerse ATC, Cros L, Probert I, Young JR (2002) Life-cycle associations involving pairs of holococcolithophorid species: intraspeci®c variation or cryptic speciation ? Eur J Phycol 37:531–550
Geisen M, Young JR, Probert I, Sáez AG, Baumann KH, Sprengel C, Bollmann J, Cross L, de Vargas C, Medlin LK (2004) Species level variation in coccolithophores. In Thierstein HR, Young JR (eds) Coccolithophores. From Molecular Processes to Global Impact. Springer, Berlin, pp 327–366
Geitler L (1924) Chroomonas caudata, nova spec. Österreichische Botanische Zeitschrift 73:246–247
Geitler L (1930) Ein grünes Filarplasmodium und andere neue Protisten. Arch Protistenk 69:614–636
Geitler L (1932) Rabenhorst’s Kryptogamenflora von Deutschland, Österreich und der Schweiz. Cyanophyceae. Akademische Verlagsgesellschaft, Leipzig, Germany, Vierzehnter Band, p 1196
Gerea M, Pérez GL, Unrein F, Soto Cárdenas C, Morris D, Queimaliños C (2017) CDOM and the underwater light climate in two shallow North Patagonian lakes: Evaluating the effects on nano and microphytoplankton community structure. Aquat Sci 79:231–248
Gerea M, Saad J, Izaguirre I, Queimaliños C, Gasol J, Unrein F (2016) Presence, abundance and bacterivory of the mixotrophic algae Pseudopedinella (Dictyochophyceae) in freshwater environments. Aquat Microb Ecol 76:219–232
Gervais F (1997a) Light-dependent growth, dark survival, and glucose uptake by cryptophytes isolated from a freshwater chemocline. J Phycol 33:18–25
Gervais F (1997b) Diel vertical migration of Cryptomonas and Chromatium in the deep chlorophyll maximum of a eutrophic lake. J Plankton Res 19:533–550
Gervais F (1998) Ecology of cryptophytes coexisting near a freshwater chemocline. Freshw Biol 39:61–78
Gibbs SP (1978) The chloroplasts of Euglena may have evolved from symbiotic green algae. Can J Bot 56(22):2883–2889
Gieskes WWC, Kraay GW (1983) Dominance of Cryptophyceae during the phytoplankton spring bloom in the central North Seq detected by HPLC analysis of pigments. Mar Biol 75:179–185
Gilbert W (1978) Why genes in pieces? Nature 271(5645):501
Gillott M, Gibbs SP (1980) The cryptomonad nucleomorph: Its ultrastructure and evolutionary significance. J Phycol 16:558–568
Gillott M, Gibbs SP (1983) Comparison of the flagellar rootlets and periplast in two marine cryptomonads. Can J Bot 61:1964–1978
Gilson P, McFadden G (1999) Molecular, morphological and phylogenetic characterization of six chlorarachniophyte strains. Phycol Res 47:7–19
Giroldo D, Vieira AAH (2002) An extracellular sulfated fucose-rich polysaccharide produced by a tropical strain of Cryptomonas obovata (Cryptophyceae). J Appl Phycol 14:185–191
Giroldo D, Vieira AAH, Paulsen BS (2005) Extracellular polysaccharides produced by a tropical cryptophyte as a carbon source for natural bacterial populations. Eur J Phycol 40:241–249
Glazer AN, Wedemayer GJ (1995) Cryptomonad biliproteins – an evolutionary perspective. Photosynth Res 46:93–105
Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y et al (2011) Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proc Natl Acad Sci 108:4352–4357
Gobler CJ, Lonsdale DJ, Boyer GL (2005) A review of the causes, effects, and potential management of harmful brown tide blooms caused by Aureococcus anophagefferens (Hargraves et Sieburth). Estuaries 28:726–749
Gockel G, Hachtel W (2000) Complete gene map of the plastid genome of the non-photosynthetic euglenoid flagellate Astasia longa. Protist 151(4):347–351
Godhe A, Egardt J, Kleinhans D, Sundqvist L, Hordoir R, Jonsson PR (2013) Seascape analysis reveals regional gene flow patterns among populations of a marine planktonic diatom. Proc Royal Soc b: Biol Sci 280:20131599
Gojdics M (1953) Genus Euglena. The University of Wisconsin Press
Goldstein SF (1992) Flagellar Beat Patterns in Algae. In Melkonian M (ed) Algal Cell Motility. Springer US, Boston, MA, pp 99–153
Gómez F (2012) A quantitative review of the lifestyle, habitat and trophic diversity of dinoflagellates (Dinoflagellata, Alveolata). System Biodiv 10:267–275. https://doi.org/10.1080/14772000.2012.721021
Gong WD, Hall N. Paerl H, Marchetti A (2020) Phytoplankton composition in a eutrophic estuary: comparison of multiple taxonomic approaches and influence of environmental factors. Environ Microb 22:4718–4731
Goodenough U, Roth R, Kariyawasam T, He A, Lee J-H (2018) Epiplasts: membrane skeletons and epiplastin proteins in euglenids, glaucophytes, cryptophytes, ciliates. Dinoflagellates, and apicomplexans. Molec Biol Physiol 9(5):e02020–18
Gottlieb J (1850) Ueber eine neue, mit Stärkemehl isomere Substanz. Justus Liebigs Ann Chem 75(1):51–61
Gould SB, Fan E, Hempel F, Maier UG, Klösgen RB (2007) Translocation of a phycoerythrin α subunit across five biological membranes. J Biol Chem 282:30295–30302
Gould SB, Sommer MS, Kroth PG, Gile GH, Keeling PJ, Maier UG (2006) Nucleus-to- nucleus gene transfer and protein retargeting into a remnant cytoplasm of cryptophytes and diatoms. Genome Biol Evol 23:2413–2422
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (2015) Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics. Science 349:647–650
Govorunova EG, Sineshchekov OA, Rodarte E, Janz R, Morelle O, Melkonian M, Wong GKS, Spudich JL (2017) The expanding family of natural anion channelrhodopsins reveals large variations in kinetics, conductance, and spectral sensitivity. Sci Rep 7:43358
Graf L, Kim YJ, Cho GY, Miller KA, Yoon HS (2017) Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers. PLoS ONE 12:e0187104
Graf L, Shin Y, Yang JH, Choi JW, Hwang IK, Nelson W, Bhattacharya D et al (2021) A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida. Nat Ecol Evol 5:360–368
Graf L, Shin Y, Yang JH, Hwang IK, Yoon HS (2022) Transcriptome analysis reveals the spatial and temporal differentiation of gene expression in the sporophyte of Undaria pinnatifida. Algal Res 68:102883
Graf L, Yang EC, Boo GH, Andersen RA, Yoon HS (2020a) Further investigations on the Phaeothamniophyceae using a multigene phylogeny, with descriptions of five new species. J Phycol 56:358–379
Graf L, Yang EC, Han KY, Küpper FC, Benes KM, Oyadomari JK, Herbert RJH et al (2020b) Multigene phylogeny, morphological observation and re-examination of the literature lead to the description of the Phaeosacciophyceae classis nova and four new species of the Heterokontophyta SI clade. Protist 171:125781
Graham LE, Graham JM, Wilcox LW, Cook ME (2016) Algae. Third Edition. LJLM Press, p 683
Graham MH (2004) Effects of local deforestation on the diversity and structure of Southern California giant kelp forest food webs. Ecosystems 7
Graham MH, Dayton PK, Erlandson JM (2003) Ice ages and ecological transitions on temperate coasts. Trends Ecol Evol 18:33–40
Graham MH, Kinlan BP, Grosberg RK (2010) Post-glacial redistribution and shifts in productivity of giant kelp forests. Proc Royal Soc b: Biol Sci 277:399–406
Grant B, Waller RF, Clementson LA, Wetherbee R (2013) Psammamonas australis gen. et sp. nov. (Raphidophyceae), a new dimorphic, sand-dwelling alga. Phycologia 52:57–64
Gray J, Boucot AJ (1989) Is Moyeria a euglenoid? Lethaia 22(4):447–456
Greenwood AD (1959) Observations on the structure of the zoospores of Vaucheria, II. J Experim Botany 10:55–68
Greenwood AD, Manton I, Clarke B (1957) Observations on the structure of the zoospores of Vaucheria. J Exp Bot 8:71–86
Greenwood SJ, Schnare MN, Cook JR, Gray MW (2001) Analysis of intergenic spacer transcripts suggests ‘read-around’ transcription of the extrachromosomal circular rDNA in Euglena gracilis. Nucleic Acids Res 29(10):2191–2198
Grell KG (1990) Some light microscope observations on Chlorarachnion reptans Geitler. Arch Protistenk 138:271–290
Grim JN, Staehelin LA (1982) The ejectisomes of the flagellate Chilomonas paramecium: Visualization by Freeze-fracture and isolation techniques. J Protozool 31:259–267
Gromov BV, Mamkaeva KA, Gavrilova OV (1998) Ultrastructure of the flagella of Campylomonas reflexa (Cryptophyceae = Cryptomonadea). Nova Hedwigia 66:197–204
Grossmann L, Bock C, Schweikert M, Boenigk J (2016) Small but manifold - Hidden diversity in “ Spumella-like flagellates.” J Eukaryot Microbiol 63:419–439
Guillou L, Chrétiennot-Dinet M-J, Medlin LK, Claustre H, Goër SL, Vaulot D (1999) Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J Phycol 35:368–381
Guiry MD, Guiry GM (2021) AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org
Gustafson DE Jr, Stoecker DK, Johnson MD, Van Heukelem WF, Sneider K (2000) Cryptophyte algae are robbed of their organelles by the marine ciliate Mesodinium rubrum. Nature 405:1049–1052
Hachtel W (1998) A plastid genome in the heterotrophic flagellate Astasia longa. Endocytobiosis Cell Res 12:191–193
Hackett JD, Maranda L, Yoon HS, Bhattacharya D (2003) Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J Phycol 39:440–448. https://doi.org/10.1046/j.1529-8817.2003.02100.x
Hajdu S, Höglander H, Larsson U (2007) Phytoplankton vertical distributions and composition in Baltic Sea cyanobacterial blooms. Harmful Algae 6:189–205
Hajós M, Stradner H (1975) Late Cretaceous Archaeomonadaceae, Diatomaceae, and Silicoflagellatae from the South Pacific Ocean, Deep Sea Drilling Project, Leg 29, Site 275. Init Rep Deep Sea Drilling Proj 29:913–1009
Hallick RB, Hong L, Drager RG, Favreau MR, Monfort A, Orsat B, Spielmann A, Stutz E (1993) Complete sequence of Euglena gracilis chloroplast DNA. Nucleic Acids Res 21(15):3537–3544
Halm H, Lüder UH, Wiencke C (2011) Induction of phlorotannins through mechanical wounding and radiation conditions in the brown macroalga Laminaria hyperborea. Eur J Phycol 46:16–26
Hammer A, Schumann R, Schubert H (2002) Light and temperature acclimation of Rhodomonas salina (Cryptophyceae): photosynthetic performance. Aquat Microb Ecol 29:287–296
Hammond MJ, Nenarokova A, Butenko A, Zoltner M, Dobáková EL, Field MC, Lukeš J (2020) A uniquely complex mitochondrial proteome from Euglena gracilis. Mol Biol Evol 37(8):2173–2191
Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ (2009) Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups.” Proc Natl Acad Sci 106(10):3859–3864
Han KY, Maciszewski K, Graf L, Yang JH, Andersen RA, Karnkowska A, Yoon HS (2019) Dictyochophyceae plastid genomes reveal unusual variability in their organization. J Phycol 55:1166–1180
Han KY, Graf L, Reyes CP, Melkonian B, Andersen RA, Yoon HS, Melkonian M (2018) A re-investigation of Sarcinochrysis marina (Sarcinochrysidales, Pelagophyceae) from its type locality and the descriptions of Arachnochrysis, Pelagospilus, Sargassococcus and Sungminbooa genera nov. Protist 169:79–106
Händeler K, Grzymbowski YP, Krug PJ, Wägele H (2009) Functional chloroplasts in metazoan cells - a unique evolutionary strategy in animal life. Front Zool 6:28. https://doi.org/10.1186/1742-9994-6-28
Hansen PJ (1991) Dinophysis - a planktonic dinoflagellate genus which can act both as a prey and a predator of a ciliate. Mar Ecol Prog Ser 69:201–204
Hansgirg A (1885) Anhang zu meiner Abhandlung „Ueber den Polymorphismus der Algen“. Bot Centralbl 23:229–233
Hanssen LA, Ekvall MK, He L, Li Z, Svensson M, Urrutia-Cordero PZH (2020) Different climate scenarios alter dominance patterns among aquatic primary producers in temperate systems. Limnol Oceanog 65:2328–2336
Hara Y, Chihara M (1985) Ultrastructure and taxonomy of Fibrocapsa japonica (class Raphidophyceae). Arch Protistenk 130(1–2):133–141
Hara Y, Chihara M (1987) Morphology, ultrastructure and taxonomy of the raphidophycean alga Heterosigma akashiwo. Botanical Mag Tokyo 100:151–163
Hara Y, Inouye I, Chihara M (1985) Morphology and ultrastructure of Olisthodiscus luteus (Raphidophyceae) with special reference to the taxonomy. Botan Mag Tokyo 98:251–262
Harper JT, Waanders E, Keeling PJ (2005) On the monophyly of chromalveolates using a six- protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 55:487–496
Harwood DM, Nikolaev VA, Winter DM (2007) Cretaceous records of diatom evolution, radiation, and expansion. Paleontol Soc Papers 13:33–59
Hauth AM, Maier UG, Lang BF, Burger G (2005) The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region. Nucleic Acids Res 33:4433–4442
Havskum H, Riemann B (1996) Ecological importance of bacterivorous, pigmented flagellates (mixotrophs) in the Bay of Aarhus, Denmark. Marine Ecol Progress Series 137:251–263
Hay WW (2004) Carbonate fluxes and calcareous nannoplankton. Coccolithophores: from molecular processes to global impact. In: Thierstein H, Young JR (eds) Springer, pp 509–527
Hayashi Y, Ueda K (1989) The shape of mitochondria and the number of mitochondrial nucleoids during the cell cycle of Euglena gracilis. J Cell Sci 93(3):565–570
Heath IB (1980) Variant mitoses in lower eukaryotes: indicators of the evolution of mitosis? Intern Rev Cytol Academic Press 64:1–80
Heesch S, Serrano-Serrano M, Barrera-Redondo J, Luthringer R, Peters AF, Destombe C, Cock MJ, Valero M, Roze D, Salamin N, Coelho SM (2021) Evolution of life cycles and reproductive traits: insights from the brown algae. J Evol Biol 34:992–1009
Hehenberger E, Gast RJ, Keeling PJ (2019) A kleptoplastidic dinoflagellate and the tipping point between transient and fully integrated plastid endosymbiosis. Proc Nat Acad Sci 116:17934. https://doi.org/10.1073/pnas.1910121116
Heiden H, Kolbe RW (1928) Die marinen Diatomeen der Deutschen Südpolar-Expedition 1901–03. Deutsche Südpolar Exp 8(5):450–714
Heimann K, Andersen RA, Wetherbee R (1995) The flagellar development cycle of the uniflagellate Pelagomonas calceolata (Pelagophyceae). J Phycol 31:577–583
Heinrich S, Valentin K, Frickenhaus S, John U, Wiencke C (2012) Transcriptomic analysis of acclimation to temperature and light stress in Saccharina latissima (Phaeophyceae). PLoS ONE 7:e44342
Heinrich S, Valentin K, Frickenhaus S, Wiencke C (2015) Temperature and light interactively modulate gene expression in Saccharina latissima (Phaeophyceae). J Phycol 51:93–108
Helmchen TA, Bhattacharya D, Melkonian M (1995) Analyses of ribosomal RNA sequences from glaucocystophyte cyanelles provide new insights into the evolutionary relationships. J Mol Evol 41:203–210
Henriksen P, Knipschildt F, Moestrup Ø, Thomsen HA (1993) Autecology, life history and toxicology of the silicoflagellate Dictyocha speculum (Silicoflagellata, Dictyochophyceae). Phycologia 32:29–39
Henry BE, Van Alstyne KL (2004) Effects of UV radiations on growth and phlorotannins in Fucus gardneri (Phaeophyceae) juveniles and embryos. J Phycol 40:527–533
Hermann TN (1981) Nitchatye mikroorganizmy Lakhandinskoi svity reki Mai. Paleontol Zh 2:126–131
Herth W, Kuppel A, Schnepf E (1977) Chitinous fibrils in the lorica of the flagellate chrysophyte Poteriochromonas stipitata (syn. Ochromonas malhamensis). J Cell Biol 73:311–321
Heywood P (1990) Phylum Raphidophyta. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones and Bartlett Publishers, Boston, Massachusetts, USA, pp 318–325
Heywood P, Leedale GF (2002) Order Raphidomonadida. In: Lee JJ, Leedale GF, Bradbury P (eds) An illustrated guide to the protozoa, vol 2, 2nd edn. Society of Protozoologists, Lawrence, Kansas, USA, pp 744–751
Hibberd DJ (1970) Observations on the cytology and ultrastructure of Ochromonas tuberculatus sp. nov. (Chrysophyceae), with special reference to the discobolocysts. Br Phycol J 5(2):119–143
Hibberd DJ (1973) Observations on the ultrastructure of flagellar scales in the genus Synura (chrysophyceae). Arch Mikrobiol 89:291–304
Hibberd DJ (1974) Observations on the cytology and ultrastructure of Chlorobotrys regularis (West) Bohlin with special reference to its position in the Eustigmatophyceae. Brit Phycol J 9:37–46
Hibberd DJ (1976) The ultrastructure and taxonomy of the Chrysophyceae and Prymnesiophyceae (Haptophyceae): a survey with some new observations on the ultrastructure of the Chrysophyceae. Bot J Linn Soc 72:55–80
Hibberd DJ (1979) The structure and phylogenetic significance of the flagellar transition region in the chlorophyll c-containing algae. Biosystems 11:243–261
Hibberd DJ (1980) Xanthophytes. In ER Cox (Ed.), Phytoflagellates: form and function. New York/Amsterdam/Oxford: Elsevier/North Holland, pp 243–271
Hibberd DJ (1981) Notes on the taxonomy and nomenclature of the algal classes Eustigmatophyceae and Tribophyceae (synonym Xanthophyceae). Bot J Linn Soc 82:93–119
Hibberd DJ (1990a) Phylum Xanthophyta. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones and Bartlett Publishers, Boston, Massachusetts, USA, pp 686–697
Hibberd DJ (1990b) Phylum Eustigmatophyta. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones and Bartlett Publishers, Boston, Massachusetts, USA, pp 326–333
Hibberd DJ, Chretiennot-Dinet MJ (1979) The ultrastructure and taxonomy of Rhizochromulina marina gen. et ap. nov., an amoeboid marine chrysophyte. J Mar Biol Assoc UK 59:179–193
Hibberd DJ, Greenwood AD, Griffiths HB (1971) Observations on the ultrastructure of the flagella and periplast in the Cryptophyceae. Brit Phycol J 6:61–72
Hibberd DJ, Leedale GF (1970) Eustigmatophyceae - a new algal class with unique organization of the motile cell. Nature 225:758–760
Hibberd DJ, Leedale GF (1971) Cytology and ultrastructure of the Xanthophyceae. II. The zoospore and vegetative cell of coccoid forms, with special reference to Ophiocytium majus Naegeli. Brit Phycol J 6:1–23
Hibberd DJ, Leedale GF (1972) Observations on the cytology and ultrastructure of the new algal class, Eustigmatophyceae. Ann Botany 36:49–71
Hibberd DJ, Norris RE (1984) Cytology and ultrastructure of Chlorarachnion reptans (Chlorarachniophyta divisio nova, Chlorarachniophyceae classis nova). J Phycol 20:310–330
Hildebrand M, Lerch SJL, Shrestha RP (2018) Understanding diatom cell wall silicification - Moving forward. Front Marine Sci 5
Hilenski LL, Walne PL (1983) Ultrastructure of Mucocysts in Peranema trichophorum (Euglenophyceae) 1. J Protozool 30(3):491–496
Hill DRA (1991a) A revised circumscription of Cryptomonas (Cryptophyceae) based on examination of Australian strains. Phycologia 30:170–188
Hill DRA (1991b) Chroomonas and other blue-green cryptomonads. J Phycol 27:133–145
Hill DRA, Rowan KS (1989) The biliproteins of the Cryptophyceae. Phycologia 28:455–463
Hill DRA, Wetherbee R (1986) Proteomonas sulcata gen. et sp. nov. (Cryptophyceae), a cryptomonad with two morphologically distinct and alternating forms. Phycologia 25:521–543
Hill DRA, Wetherbee R (1988) The structure and taxonomy of Rhinomonas pauca gen. et sp. nov. (Cryptophyceae). Phycologia 27:355–365
Hill DRA, Wetherbee R (1989) A reappraisal of the genus Rhodomonas (Cryptophyceae). Phycologia 28:143–158
Hill DRA, Wetherbee R (1990) Guillardia theta gen. et sp. nov. (Cryptophyceae). Can J Bot 68:1873–1876
Hindák F, Wolowski K, Hindáková A (2000) Cysts and their formation in some neustonic Euglena species. Annal Limnol Intern J Limnol EDP Sci 36(2):83–93
Hirakawa Y (2017) Chlorarachniophytes with complex secondary plastids of green algal origin. Adv Botan Res 84:359–393
Hirakawa Y, Howe A, James ER, Keeling PJ (2011) Morphological diversity between culture strains of a Chlorarachniophyte, Lotharella globosa. PLoS One 6(8):e23193
Hirakawa Y, Ishida KI (2014) Polyploidy of endosymbiotically derived genomes in complex algae. Genome Biol Evol 6:974–980
Hiroishi S, Okada H, Imai I, Yoshida T (2005) High toxicity of the novel bloom-forming species Chattonella ovata (Raphidophyceae) to cultured fish. Harmful Algae 4:783–787
Hirose Y, Shiozaki T, Otani M, Kudoh S, Imura S, Eki T, Harada N (2020) Investigating algal communities in lacustrine and hydro-terrestrial environments of east Antarctica using deep amplicon sequencing. Microorganisms 8:497
Hoef-Emden K (2005) Multiple independent losses of photosynthesis in the genus Cryptomonas (Cryptophyceae)—combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons. J Mol Evol 60:183–195
Hoef-Emden K (2007) Revision of the genus Cryptomonas (Cryptophyceae) II: incongruences between the classical morphospecies concept and molecular phylogeny in smaller pyrenoid-less cells. Phycologia 46:402–428
Hoef-Emden K (2008) Molecular phylogeny of the phycocyanin-containing cryptophytes: evolution of biliproteins and geographical distribution. J Phycol 44:985–993
Hoef-Emden K (2012) Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS ONE 7(8):e43652
Hoef-Emden K (2014) Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist 165:123–143
Hoef-Emden K (2018) Revision of the genus Chroomonas Hansgirg: the benefits of DNA- containing specimens. Protist 169:662–681
Hoef-Emden K, Marin B, Melkonian M (2002) Nuclear and nucleomorph SSU rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity. J Mol Evol 55:161–179
Hoef-Emden K, Melkonian M (2003) Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism. Protist 154: 371–409. Corrigenda: Hoef-Emden K, Melkonian M (2008) Protist 159:507; Hoef-Emden K, Melkonian M (2017) Protist 168:467
Hoef-Emden K, Tran H-D, Melkonian M (2005) Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on rbcL in Cryptomonas (Cryptophyceae). BMC Evolol Biol 5:56
Hoegh Guldberg O, Chopin T, Gaines S, Haugan P, Hemer M, Howard J, Konar M (2019) The ocean as a solution to climate change: five opportunities for action. World Resources Institute, Washington, DC, USA
Hoffmann L, Billard C, Janssens M, Leruth M, Demoulin V (2000) Mass development of marine benthic Sarcinochrysidales (Chrysophyceae s.l.) in Corsica. Botanica Marina, p 43
Hoham RW, Blinn DW (1979) Distribution of cryophilic algae in an arid region, the American Southwest. Phycologia 18(2):133–145
Holbrook SJ, Carr MH, Schmitt RJ, Coyer JA (1990) Effect of giant kelp on local abundance of reef fishes: the importance of ontogenetic resource requirements. Bull Mar Sci 47:104–114
Holen DA, Boraas ME (1995) Mixotrophy in chrysophytes. In: Sandgren CD, Smol JP, Kristiansen J (eds) Chrysophyte Algae, 1st edn. Cambridge University Press, pp 119–140
Honda D, Inouye I (1995) Ultrastructure and reconstruction of the flagellar apparatus architecture in Ankylochrysis lutea (Chrysophyceae, Sarcinochrysidales). Phycologia 34:215–227
Honda D, Inouye I (2002) Ultrastructure and taxonomy of a marine photosynthetic stramenopile Phaeomonas parva gen. et sp. nov. (Pinguiophyceae) with emphasis on the flagellar apparatus architecture. Phycol Res 50:75–89
Honda D, Shono T, Kimura K, Fujita S, Iseki M, Makino Y, Murakami A (2007) Homologs of the sexually induced gene 1 (sig1) product constitute the Stramenopile mastigonemes. Protist 158:77–88
Honigberg BM (1963) Evolutionary and systematic relationships in the flagellate order Trichomonadida Kirby. J Protozool 10(1):20–63
Hopkins JF, Spencer DF, Laboissiere S, Neilson JAD, Eveleigh RJM, Durnford DG, Gray MW, Archibald JM (2012) Proteomics reveals plastid- and periplastid-targeted proteins in the chlorarachniophyte alga Bigelowiella natans. Genome Biol Evol 4(12):1391–1406
Hoppenrath M (2017) Dinoflagellate taxonomy—a review and proposal of a revised classification. Marine Biodiv 47:381–403. https://doi.org/10.1007/s12526-016-0471-8
Hoppenrath M, Chomérat N, Horiguchi T, Schweikert M, Nagahama Y, Murray S (2013) Taxonomy and phylogeny of the benthic Prorocentrum species (Dinophyceae)—A proposal and review. Harmful Algae 27:1–28. https://doi.org/10.1016/j.hal.2013.03.006
Hoppenrath M, Elbrächter M, Drebes G (2009) Marine Phytoplankton. Selected microphytoplankton species from the North Sea around Helgoland and Sylt. Stuttgart, Germany: E. Schweizerbart’sche Verlagsbuchhandlung (Nägele u. Obermiller), p 264
Hoppenrath M, Murray SA, Chomérat N, Horiguchi T (2014) Marine benthic dinoflagellates - unveiling their worldwide biodiversity. Kleine Senckenberg-Reihe 54. Stuttgart, Germany: E. Schweizerbart’sche Verlagsbuchhandlung (Nägele u. Obermiller), p 276
Hoppenrath M, Saldarriaga J, Tillmann U (2018) Dinoflagellaten – ein Dauerexperiment der Evolution? Biol Unserer Zeit 48:228–238
Horiguchi T (1996) Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol Res 44:143–150
Horiguchi T (2017) Raphidophyceae (Raphidophyta). In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the protists. Springer International Publishing, Cham, pp 305–330
Horiguchi T, Hoppenrath M (2003) Haramonas viridis sp. nov. (Raphidophyceae, Heterokontophyta), a new sand-dwelling raphidophyte from cold temperate waters. Phycol Res 51:61–67
Horn S, Ehlers K, Fritzsch G, Gil-Rodríguez MC, Wilhelm C, Schnetter R (2007) Synchroma grande spec. nov. (Synchromophyceae class. nov., Heterokontophyta): an amoeboid marine alga with unique plastid complexes. Protist 158:277–293
Hosoi-Tanabe S, Honda D, Fukaya S, Otake I, Inagaki Y, Sako Y (2007) Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a former raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycol Res 55:185–192
Howe CJ, Barbrook AC, Nisbet RER, Lockhart PJ and Larkum AWD (2008). The origin of plastids. Philos Trans Royal Soc B. Biol Sci 363(1504):2675–2685
Hrdá Š, Fousek J, Szabová J, Hampl V and Vlček Č (2012). The plastid genome of Eutreptiella provides a window into the process of secondary endosymbiosis of plastid in euglenids. PLoS One 7(3):e33746. https://www.nature.com/articles/nature05496#supplementary-information
Hu Z, Li Z, Deng Y, Iwataki M, Luo Z, Wang J, Sun Y, Zhao Z, Gu H, Shin HH, Tang YZ (2020) Morphology, ultrastructure, and molecular phylogeny of the unarmoured dinoflagellate Kirithra sigma sp. nov. (Ceratoperidiniaceae, Dinophyceae). Phycologia 59:385–396. https://doi.org/10.1080/00318884.2020.1771660
Huang W, Daboussi F (2017) Genetic and metabolic engineering in diatoms. Philosop Trans Royal Soc b: Biol Sci 372:20160411
Hwang EK, Boo GH, Graf L, Yarish C, Yoon HS, Kim JK (2022) Kelps in Korea: from population structure to aquaculture to potential carbon sequestration. Algae 37(2):85–103
Huber-Pestalozzi G (1955). Das Phytoplankton des Süsswassers. Systematik und Biologie. 4. Teil: Euglenophyceen. Die Binnengewässer 16(4):1–1135
Huber-Pestalozzi G (1968) Das Phytoplankton des Süßwassers. 3. Teil. Cryptophyceae, Chloromonadophyceae, Dinophyceae. In Elster H-J, Ohle W (eds) Die Binnengewässer
Huttenlauch I, Stick R (2003) Occurrence of Articulins and epiplasmins in protists. J Eukaryot Microbiol 50(1):15–18
Hwang EK, Yotsukura N, Pang SJ, Su L, Shan TF (2019) Seaweed breeding programs and progress in eastern Asian countries. Phycologia 58:484–495
Ichinomiya M, dos Santos AL, Gourvil P, Yoshikawa S, Kamiya M, Ohki K, Audic S et al (2016) Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J 10:2419–2434
Ichinomiya M, Yoshikawa S, Kamiya M, Ohki K, Takaichi S, Kuwata A (2011) Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J Phycol 47:144–151
Ikävalko J (2001) On the presence of some selected Heterokontophyta (Chrysophyceae, Dictyochophyceae, Bicocoecidae) and cysts (“archaeomonads”) from sea ice—a synopsis. Nova Hedwig Beih 122:41–54
Imai I, Itoh K (1987) Annual life cycle of Chattonella spp., causative flagellates of noxious red tides in the Inland Sea of Japan. Mar Biol 94:287–292
Imanian B, Pombert J-F, Dorrell RG, Burki F, Keeling PJ (2012) Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts. PLOS One 7:e43763. https://doi.org/10.1371/journal.pone.0043763
Imanian B, Pombert J-F, Keeling PJ (2010) The complete plastid genomes of the two ‘dinotoms’ Durinskia baltica and Kryptoperidinium foliaceum. PLOS One 5:e10711. https://doi.org/10.1371/journal.pone.0010711
Inagaki Y, Dacks JB, Doolittle WF, Watanabe KI, Ohama T (2000) Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis. Intern J Syst Evolut Microbiol 50:2075–2081. https://doi.org/10.1099/00207713-50-6-2075
Inouye I, Hara Y, Chihara M (1992) Further observations on Olithodiscus luteus (Raphidophyceae, Chromophyta): The flagellar apparatus ultrastructure. Jpn J Phycol 40:333–348
Inouye I, Kawachi M (1994) The haptonema. In: Green JC, Leadbeater BSC (eds) The haptophyte Algae, vol 51. Clarendon, Oxford, pp 73–89
International Commission on Zoological Nomenclature (2012) Amendment of Articles 8, 9, 10, 21 and 78 of the International Code of Zoological Nomenclature to expand and refine methods of publication. Zootaxa 3450:1–7
Inui H, Ishikawa T, Tamoi M (2017) Wax ester fermentation and its application for biofuel production. In: Euglena: biochemistry, cell and molecular biology, pp 269–283
Inui H, Miyatake K, Nakano Y, Kitaoka S (1982) Wax ester fermentation in Euglena gracilis. FEBS Lett 150:89–93
Inui H, Miyatake K, Nakano Y, Kitaoka S (1992) Synthesis of reserved polysaccharide from wax esters accumulated as the result of anaerobic energy generation in Euglena gracilis returned from anaerobic to aerobic conditions. Int J Biochem 24:799–803
Ishida K, Endo H, Koike S (2011) Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp. Phycol Res 59:120–122
Ishida K, Green BR, Cavalier-Smith T (1999) Diversification of a chimaeric algal group, the chlorarachniophytes: phylogeny of nuclear and nucleomorph small-subunit rRNA genes. Mol Biol Evol 16:321–333
Ishida K, Hara Y (1994) Taxonomic studies on the Chlorarachniophyta. I. Chlorarachnion globosum sp. nov. Phycologia 33:351–358
Ishida K, Ishida N, Hara Y (2000) Lotharella amoeboformis sp. nov.: a new species of chlorarachniophyte from Japan. Phycol Res 48:221–229
Ishida K, Nakayama T, Hara Y (1996) Taxonomic studies on the Chlorarachniophyta. II. Generic delimination of the chlorarachniophytes and description of Gynmochlora stellata gen. et sp. nov. Phycol Res 44:37–45
Ishida K-i, Green BR (2002) Second- and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc Nat Acad Sci 99:9294. https://doi.org/10.1073/pnas.142091799
Ishida KI, Yabuki A, Ota S (2007) The chlorarachniophytes: evolution and classification. Systematics association special volume, vol 75, p 171
Ishimatsu A, Oda T, Yoshida M, Ozaki M (1996) Oxygen radicals are probably involved in the mortality of yellowtail by Chattonella marina. Fish Sci 62:836–837
Jackson C, Knoll AH, Chan CX, Verbruggen H (2018) Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids. Sci Rep 8:1523
Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF (2017) Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics. Proc Nat Acad Sci 114:E171-E180. https://doi.org/10.1073/pnas.1614842114
Janouškovec J, Horák A, Oborník M, Lukeš J, Keeling PJ (2010) A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Nat Acad Sci 107:10949–10954. https://doi.org/10.1073/pnas.1003335107
Javornický P, Hindák F (1970) Cryptomonas frigoris spec. nova (Cryptophyceae), the new cyst-forming flagellate from the snow of the High Tatras. Biologia, Series A 25:241–250
Jeffrey SW, Wright SW, Zapata M (2011) Microalgal classes and their signature pigments. In: Roy S, Llewellyn C, Egeland ES, Johnsen G (eds) Phytoplankton Pigments. Cambridge University Press, Cambridge, pp 3–77
Jékely G (2009) Evolution of phototaxis. Philos Trans R Soc B 364:2795–2808
Jeong HJ (2011) Mixotrophy in red tide algae raphidophytes. J Eukaryot Microbiol 58:215–222
Jeppesen E, Søndergaard M, Jensen JP, Havens KE, Anneville O, Carvalho L, Coveney MF, Deneke R, Dokulil MT, Foy B, Gerdeaux D, Hampton SE, Hilt S, Kangur K, Köhler J, Lammens EHHR, Lauridsen TL, Manca M, Miracle MR, Moss B, Nöges P, Persson G, Phillips G, Portielje R, Romo S, Schelske CL, Straile D, Tatrai I, Willén E, Winder M (2005) Lake responses to reduced nutrient loading—an analysis of contemporary long-term data from 35 case studies. Freshw Biol 50:1747–1771
Jepsen PM, Thoisen CV, Carron-Cabaret T, Pinyol-Gallemí A, Nielsen SL, Hansen BW (2019) Effects of salinity, commercial salts, and water type on cultivation of the cryptophyte microalgae Rhodomonas salina and the calanoid copepod Acartia tonsa. J World Aquaculture Soc 50:104–118
Jezbera J, Horňák K, Šimek K (2005) Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization. FEMS Microbiol Ecol 52:351–363
Jin J-O, Chauhan PS, Arukha AP, Chavda V, Dubey A, Yadav D (2021) The therapeutic potential of the anticancer activity of fucoidan: current advances and hurdles. Mar Drugs 19:265
Jo BY, Kim JI, Škaloud P, Siver PA, Shin W (2016) Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence. Eur J Phycol 51(4):413–430
Jo BY, Shin W, Kim HS, Siver PA, Andersen RA (2013) Phylogeny of the genus Mallomonas (Synurophyceae) and descriptions of five new species on the basis of morphological evidence. Phycologia 52:266–278
John U, Lu Y, Wohlrab S, Groth M, Janouškovec J, Kohli GS, Mark FC, Bickmeyer U, Farhat S, Felder M, Frickenhaus S, Guillou L, Keeling PJ, Moustafa A, Porcel BM, Valentin K, Glöckner G (2019) An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Sci Adv 5:eaav1110. https://doi.org/10.1126/sciadv.aav1110
Johnston AM, Raven JA (1990) Effects of culture in high CO2 on the photosynthetic physiology of Fucus serratus. Br Phycol J 25(1):75–82
Johnson MD (2011) Acquired phototrophy in ciliates: A review of cellular interactions and structural adaptations. J Eukaryot Microbiol 58:185–195
Johnson MD, Beaudoin DJ, Frada MJ, Brownlee EF, Stoecker DK (2018) High grazing rates on cryptophyte algae in Chesapeake Bay. Front Mar Sci 5:241
Johnson MD, Oldach D, Delwiche CF, Stoecker DK (2007) Retention of transcriptionally active cryptophyte nuclei by the ciliate Myrionecta rubra. Nature 445:426. https://doi.org/10.1038/nature05496
Jones DT (1944) Two protozoans from the Great Salt Lake. Bulletin of the University of Utah Biological Series 8:3–10
Jones RI (1988) Vertical distribution and diel migration of flagellated phytoplankton in a small humic lake. Hydrobiologia 161:75–87
Joyon L (1963) Sur la présence d’un leucoplaste chez la cryptomonadine décolorée Chilomonas paramecium Ehrenberg. Comptes Rendues Des Scéances De L’académie Des Sciences, Paris 256:3502–3503
Jumper CC, van Stokkum IHM Mirkovic T, Scholes GD (2018) Vibronic wavepackets and energy transfer in cryptophyte light-harvesting complexes. J Phys Chem B 122:6328–6340
Kai A, Yoshii Y, Nakayama T, Inouye I (2008) Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. Inhabiting sandy beaches. Protist 159:435–457
Kamikawa R, Masuda I, Oyama K, Yoshimatsu S, Sako Y (2007) Genetic variation in mitochondrial genes and intergenic spacer region in harmful algae Chattonella species. Fish Sci 73:871–880
Kamikawa R, Tanifuji G, Kawachi M, Miyashita H, Hashimoto T, Inagaki Y (2015) Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum. Genome Biol Evol 7:1133–1140. https://doi.org/10.1093/gbe/evv060
Kamikawa R, Moog D, Zauner S, Tanifuji G, Ishida KI, Miyashita H, Mayama S, Hashimoto T, Maier UG, Archibald JM, Inagaki Y (2017) A non-photosynthetic diatom reveals early steps of reductive evolution in plastids. Mol Biol Evol 34:2355–2366
Kaňa R, Kotabová E, Sobotka R, Prášil O (2012) Non-photochemical quenching in cryptophyte alga Rhodomonas salina Is located in chlorophyll a/c antennae. PLoS ONE 7(1):e29700
Karnkowska A, Bennett MS, Triemer RE (2018) Dynamic evolution of inverted repeats in Euglenophyta plastid genomes. Sci Rep 8(1):1–10
Karsten G (1898) Rhodomonas baltica, n. g. et sp. Wissenschaftliche Meeresuntersuchungen, Abteilung Kiel, NF 3:15–16
Karsten G (1912) Über die Reduktionsteilung bei der Auxosporenbildung von Surirella saxonica. Zeitschrift Für Botanik 4:417–426
Kasiborski BA, Bennett MS, Linton EW (2016) The chloroplast genome of Phacus orbicularis (Euglenophyceae): an initial datum point for the Phacaceae. J Phycol 52(3):404–411
Kawachi M, Inouye I, Honda D, O’Kelly CJ, Bailey JC, Bidigare RR, Andersen RA (2002a) The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids. Phycol Res 50:31–47
Kawachi M, Noel M-H, Andersen RA (2002b) Re-examination of the marine “chrysophyte” Polypodochrysis teissieri (Pinguiophyceae). Phycol Res 50:91–100
Kawai H, Henry EC (2017) Phaeophyta. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the protists. Springer International Publishing, Cham, pp 267–304
Kawai H, Inouye I (1989) Flagellar autofluorescence in forty-four chlorophyll c -containing algae. Phycologia 28:222–227
Kawai H, Hanyuda T, Draisma SGA, Wilce RT, Andersen RA (2015) Molecular phylogeny of two unusual brown algae, Phaeostrophion irregulare and Platysiphon glacialis, proposal of the Stschapoviales ord. nov. and Platysiphonaceae fam. nov., and a re-examination of divergence times for brown algal orders. J Phycol 51:918–928
Kawai H, Kreimer G (2000) Sensory mechanisms. Phototaxes and light perception in algae. In Leadbeater BSC, Green JC (eds) The flagellates. Unity, diversity and evolution, pp 124–146. Taylor and Francis, London, UK
Kawai H, Maeba S, Sasaki H, Okuda K, Henry EC (2003) A new filamentous marine Chromophyte belonging to a new class. Schizocladiophyceae Protist 154:211–228
Kayama M, Maciszewski K, Yabuki A, Miyashita H, Karnkowska A, Kamikawa R (2020) Highly reduced plastid genomes of the non-photosynthetic Dictyochophyceans Pteridomonas spp. (Ochrophyta, SAR) are retained for tRNA-Glu-based organellar heme biosynthesis. Front Plant Sci 11
Keeling PJ (2004) Diversity and evolutionary history of plastids and their hosts. Am J Bot 91(10):1481–1493
Keeling PJ (2010) The endosymbiotic origin, diversification and fate of plastids. Philosophical transactions of the royal society B. Biol Sci 365:729–748
Keeling PJ (2017) Chlorarachniophytes. In Archibald JM, Simpson AGB, Slomovits CH (eds) Handbook of the Protists 2nd ed, pp 765–781
Kereïche S, Kouřil R, Oostergetel GT, Fusetti F, Boekema EJ, Doust AB, van der Weij-de Wit CD, Dekker JP (2008) Association of chlorophyll a/c 2 complexes to photosystem I and photosystem II in the cryptophyte Rhodomonas CS24. Biochem Biophys Acta 1777:1122–1128
Key T, McCarthy A, Campbell DA, Six C, Roy S, Finkel ZV (2010) Cell size trade-offs govern light exploitation strategies in marine phytoplankton. Environ Microbiol 12:95–104
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM (2007) Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: Lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Mol Biol Evol 24:1832–1842
Khan S, Arakawa O, Onoue Y (1997) Neurotoxins in a toxic red tide of Heterosigma akashiwo (Raphidophyceae) in Kagoshima Bay, Japan. Aquacult Res 28:9–14
Kim E, Archibald JM (2013) Ultrastructure and molecular phylogeny of the cryptomonad Goniomonas avonlea sp. nov. Protist 164:160–182
Kim E, Lane CE, Curtis BA, Kozera C, Bowman S, Archibald JM (2008) Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae). BMC Genomics 9:215
Kim GH, Han JH, Kim B, Han JW, Nam SW, Shin W, Park JW, Yih W (2016) Cryptophyte gene regulation in the kleptoplastidic, karyokleptic ciliate Mesodinium rubrum. Harmful Algae 52:23–33
Kim JI, Jeong M, Archibald JM, Shin W (2020) Comparative plastid genomics of non-photosynthetic chrysophytes: genome reduction and compaction. Front Plant Sci 11
Kim JI, Shin W, Triemer RE (2010) Multigene analyses of photosynthetic euglenoids and new family, Phacaceae (Euglenales) 1. J Phycol 46(6):1278–1287
Kim JI, Shin H, Škaloud P, Jung J, Yoon HS, Archibald JM, Shin W (2019) Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation. BMC Evolut Biol 19
Kim M, Nam SW, Shin W, Coats DW, Park MG (2012) Dinophysis caudata (Dinophyceae) sequesters and retains plastids from the mixotrophic ciliate prey Mesodinium rubrum. J Phycol 48:569–579. https://doi.org/10.1111/j.1529-8817.2012.01150.x
Kiss JZ, Vasoconcelos AC, Triemer RE (1986) Paramylonsynthesis and chloroplast structure with nutrient levels in Euglena (Euglenophyceae). J Phycol 22(3):327–333
Kiss JZ, Vasconcelos AC, Triemer RE (1987) Structure of the euglenoid storage carbohydrate, paramylon. Am J Bot 74(6):877–882
Kiss JZ, Vasconcelos AC, Triemer RE (1988) The intramembranous particle profile of the paramylon membrane during paramylon synthesis in euglena (EUGLENOPHYCEAE) 1. J Phycol 24(2):152–157
Kitada S, Nakajima K, Hamasaki K, Shishidou H, Waples RS, Kishino H (2019) Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat. Sci Rep 9
Kivic PA, Vesk M (1972) Structure and function in the euglenoid eyespot apparatus: the fine structure, and response to environmental changes. Planta 105(1):1–14
Kjellman FR (1891) Phaeophyceae, pp 176–290. In Engler A, Prantl K (eds) Die nature lichen Pflanzenfamilien. Teil I, Abt. 2. W. Engelmann, Leipzig
Klaveness D (1982) The Cryptomonas-Caulobacter consortium: facultative ectocommensalism with possible taxonomic consequences? Nord J Bot 2:183–188
Klaveness D (1988) Ecology of the Cryptomonadida: A First Review. In: Sandgren CD (ed) Growth and reproductive strategies of freshwater phytoplankton. Cambridge University Press, Cambridge, pp 105–133
Klaveness D (1989) Biology and ecology of the cryptophyceae: status and challenges. Biol Oceanogr 6:257–270
Klebs G (1883) Über die Organisation einiger Flagellaten-Gruppen und ihre Beziehungen zu Algen und Infusorien (Vol. 1). Untersuchungen Aus Dem Botanischen Institut Zu Tübingen 1:233–362
Klebs GA (1892a) Flagellatenstudien. Theil i. Zeitschrift Für Wissenschaftliche Zoologie 55:265–351
Klebs GA (1892b) Flagellatenstudien. Theil II. Zeitschrift Für Wissenschaftliche Zoologie 55:353–445
Klöpper S, John U, Zingone A, Mangoni O, Kooistra WHCF, Cembella AD (2013) Phylogeny and morphology of a Chattonella (Raphidophyceae) species from the Mediterranean Sea: what is C. subsalsa? Eur J Phycol 48:79–92
Knapp JM, Lowe RL (2009) Spatial distribution of epiphytic diatoms on lotic bryophytes. Southeast Nat 8:305–316
Knoll AH (2003) Biomineralization and evolutionary history. Rev Mineral Geochem 54:329–356
Kolkwitz R (1926) Zur Ökologie und Systematic von Botrydium granulatum (L) Grev. Berichte Der Deutschen Botanischen Gesellschaft. 44:533–540
Konno S, Ohira R, Komuro C, Harada N, Jordan RW (2007) Six new taxa of subarctic Parmales (Chrysophyceae)
Kooistra WHCF, Gersonde R, Medlin LK, Mann DG (2007) The origin and evolution of the diatoms: Their adaptation to a planktonic existence. In Falkowski PG, Knoll AH (eds) Evolution of Primary Producers in the Sea, pp 207–249. Elsevier
Krasnova ED, Pantyulin AN, Matorin DN, Todorenko DA, Belevich TA, Milyutina IA, Voronov DA (2014) Cryptomonad alga Rhodomonas sp. (Cryptophyta, Pyrenomonadaceae) bloom in the redox zone of the basins separating from the White Sea. Microbiology 83:270–277
Krause-Jensen D, Duarte CM (2016) Substantial role of macroalgae in marine carbon sequestration. Nat Geosci 9:737–742
Krause-Jensen D, Lavery P, Serrano O, Marbà N, Masque P, Duarte CM (2018) Sequestration of macroalgal carbon: the elephant in the Blue Carbon room. Biol Let 14:20180236
Kreimer G (2008) The green algal eyespot apparatus: a primordial visual system and more? Curr Genet 55:19–43
Kretschmann J, Žerdoner Čalasan A, Meyer B, Gottschling M (2020) Zero intercalary plates in Parvodinium (Peridiniopsidaceae, Peridiniales) and phylogenetics of P. elpatiewskyi, comb. nov. Protist 171:125700. https://doi.org/10.1016/j.protis.2019.125700
Krings M, Klavins SD, Barthel M, Lausberg S, Serbet R, Taylor TN, Taylor EL (2007) Perissothallus, a new genus for Late Pennsylvanian-Early Permian noncalcareous algae conventionally assigned to Schizopteris (aphleboid foliage). Bot J Linn Soc 153:477–488
Kristiansen J, Preisig HR (eds) (2001) Encyclopedia of Chrysophyte genera. Cramer in der Gebrüder-Borntraeger-Verl.-Buchh, Berlin Stuttgart, p 260
Kristiansen J, Škaloud P (2017) Chrysophyta. In Archibald JM, Simpson AGB, Slamovits CH (eds) 9 Handbook of the Protists, pp 331–366. Springer International Publishing, Cham
Krumhansl K, Scheibling R (2012) Production and fate of kelp detritus. Mar Ecol Prog Ser 467:281–302
Kryvenda A, Rybalka N, Wolf M, Friedl T (2018) Species distinctions among closely related strains of Eustigmatophyceae (Stramenopiles) emphasizing ITS2 sequence-structure data: Eustigmatos and Vischeria. Eur J Phycol 53(4):471–491
Kuda T, Enomoto T, Yano T (2009) Effects of two storage β-1, 3-glucans, laminaran from Eicenia bicyclis and paramylon from Euglena gracilis, on cecal environment and plasma lipid levels in rats. J Funct Foods 1(4):399–404
Kugrens P, Lee RE (1987) Ultrastructure of fertilization in a cryptomonad. J Phycol 24:385–393
Kugrens P, Lee RE (1990) Ultrastructural evidence for bacterial incorporation and myxotrophy in the photosynthetic cryptomonad Chroomonas pochmanni Huber-Pestalozzi (Cryptomonadida). J Protozool 37:263–267
Kugrens P, Lee RE (1991) 15. Organization of Cryptomonads. In: The Biology of Free-Living Heterotrophic Flagellates. Patterson DJ, Larsen J (eds) Systematics Association Special Volume No. 45, pp 219–233, Clarendon Press, Osxford
Kugrens P, Lee RE, Andersen RA (1987) Ultrastructural variations in cryptomonad flagella. J Phycol 23:511–518
Kumar A, Castellano I, Patti FP, Delledonne M, Abdelgawad H, Beemster GTS, Asard H et al (2017) Molecular response of Sargassum vulgare to acidification at volcanic CO2 vents: insights from de novo transcriptomic analysis. Mol Ecol 26:2276–2290
Küpper FC, Carpenter LJ, McFiggans GB, Palmer CJ, Waite TJ, Boneberg E- M, Woitsch S et al. (2008) Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry. Proc Nat Academy Sci 105:6954-8
Kützing FT (1849) Species algarum Lipsiae. F.A. Brockhaus, Leipzig
Kützing FT (1844) Die kieselschaligen Bacillarien oder Diatomeen. Nordhausen: W. Köhne
Kuwata A, Yamada K, Ichinomiya M, Yoshikawa S, Tragin M, Vaulot D, Lopes dos Santos A (2018) Bolidophyceae, a sister picoplanktonic group of diatoms. Rev Front Marine Sci 5
La Barre S, Potin P, Leblanc C, Delage L (2010) The halogenated metabolism of brown algae (Phaeophyta), its biological importance and its environmental significance. Mar Drugs 8:988–1010
Lagerheim G (1884) Über Phaeothamnion, eine neue Gattung unter den Süsswasseralgen. Bihang Till Kongl Svenska Vet Acad Handlingar 9:3–13
LaJeunesse TC (2005) “Species” radiations of symbiotic dinoflagellates in the Atlantic and indo-pacific since the miocene-pliocene transition. Molec Biol Evol 22:570–581. https://doi.org/10.1093/molbev/msi042
Larsen J, Patterson DJ (1990) Some flagellates (Protista) from tropical marine sediments. J Nat Hist 24(4):801–937
Lambowitz AM, Zimmerly S (2004) Mobile group II introns. Annu Rev Genet 38:1–35
Lamouroux JVF (1813) Essai sur les genres de la famille des thalassiophytes non articulées. Ann Mus Hist Nat (Paris) 20:21–47, 115–139, 267–293
Lane CE, Archibald JM (2008) New marine members of the genus Hemiselmis (Cryptomonadales, Cryptophyceae). J Phycol 44:439–450
Lane CE, Khan H, MacKinnon M, Fong A, Theophilou S, Archibald JM (2006) Insight into the diversity and evolution of the cryptomonad nucleomorph genome. Mol Biol Evol 23:856–865
Lara E, Mitchell EAD, Moreira D, López García P (2011) Highly diverse and seasonally dynamic protist community in a pristine peat bog. Protist 162:14–32
Lassus P, Chomérat N, Hess P, Nézan E (2016) Toxic and harmful microalgae of the World Ocean. Intergovernmental Oceanographic Commission of UNESCO (IOC) Manuals and guides, 68. International Society for the study of Harmful Algae (ISSHA), Copenhagen, p 523
Lax G, Simpson AG (2020) The molecular diversity of phagotrophic euglenids examined using single-cell methods. Protist 171(5):125757
Lax G, Lee WJ, Eglit Y, Simpson A (2019) Ploeotids represent much of the phylogenetic diversity of euglenids. Protist 170(2):233–257
Lax G, Kolisko M, Eglit Y, Lee WJ, Yubuki N, Karnkowska A, Simpson AGB et al (2021) Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs. Mol Phylogenet Evol 159:107088
Laza-Martínez (2012) Urgorri complanatus gen. et sp. nov. (Cryptophyceae), a red-tide- forming species in brackish waters. J Phycol 48:423–435
Laza-Martínez A, Fernández-Marín B, García-Plazaola JI (2019) Rapid colour changes in Euglena sanguinea (Euglenophyceae) caused by internal lipid globule migration. Eur J Phycol 54(1):91–101
Le Corguillé G, Pearson G, Valente M, Viegas C, Gschloessl B, Corre E, Bailly X et al (2009) Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evol Biol 9:253
Leander BS (2004) Did trypanosomatid parasites have photosynthetic ancestors? Trends Microbiol 12(6):251–258
Leander BS, Farmer MA (2000) Comparative morphology of the euglenid pellicle. I. Patterns of strips and pores. J Eukaryotic Microbiol 47(5):469–479
Leander BS, Farmer MA (2001) Comparative morphology of the euglenid pellicle. II. Diversity of strip substructure. J Eukaryotic Microbiol 48(2):202–217
Leander BS, Esson HJ, Breglia SA (2007) Macroevolution of complex cytoskeletal systems in euglenids. BioEssays 29(10):987–1000
Leander BS, Lax G, Karnkowska A and Simpson AGB (2017). Euglenida. In: Handbook of the Protists (2nd edition of the Handbook of Protoctista by Margulis et al.). Archibald JM, Simpson AGB, Slamovits C (eds). Springer
Leander BS, Triemer RE, Farmer MA (2001) Character evolution in heterotrophic euglenids. Eur J Protistol 37(3):337–356
Leblanc C, Colin C, Cosse A, Delage L, La Barre S, Morin P, Fiévet B et al (2006) Iodine transfers in the coastal marine environment: the key role of brown algae and of their vanadium-dependent haloperoxidases. Biochimie 88:1773–1785
Ledermann B, Schwan M, Sommerkamp JA, Hofmann E, Béjà O, Frankenberg-Dinkel N (2018) Evolution and molecular mechanism of four-electron reducing ferredoxin-dependent bilin reductases from oceanic phages. FEBS J 285:339–356
Lee KW, Bold HC (1973) Pseudocharaciopsis texensis gen. et sp. nov., a new member of the Eustigmatophyceae. Brit Phycol J 8:31–37
Lee RE (2018) Phycology, 5th edn. Cambridge University Press, New York, NY, p 535
Lee RE, Kugrens P (1986) The occurrence and structure of flagellar scales in some freshwater cryptophytes. J Phycol 22:549–552
Lee RE, Kugrens P (1991) Kathablepharis ovalis, a colorless flagellate with interesting cytological characteristics. J Phycol 27:505–513
Lee WJ, Simpson AG (2014). Ultrastructure and molecular phylogenetic position of Neometanema parovale sp. nov.(Neometanema gen. nov.), a marine phagotrophic euglenid with skidding motility. Protist 165(4):452–472
Leedale GF (1967) Euglenida/euglenophyta. Annual Reviews in Microbiology 21(1):31–48
Leipe DD, Wainright PO, Gunderson JH, Porter D, Patterson DJ, Valois F, Himmerich S et al (1994) The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycologia 33:369–377
Lemmermann E (1913) Eugleninae. Die Süßwasser-Flora Deutschlands, Österreichs Und Der Schweiz 2(2):115–174
Lemmermann E (1899) Das Phytoplankton sächsischer Teiche. Forschungsberichte Aus Des Biologischen Station Zu Plön 7:96–135
Levasseur W, Perré P, Pozzobon V (2020) A review of high value-added molecules production by microalgae in light of the classification. Biotechnol Adv 41:107545
Lewin J, Norris RE, Jeffrey SW, Pearson BE (1977) An aberrant chrysophycean alga Pelagococcus subviridis gen. nov. from the North Pacific ocean. J Phycol 13:259–266
Lewitus AJ, Caron DA, Miller KR (1991) Effects of light and glycerol on the organization of the photosynthetic apparatus in the facultative heterotroph Pyrenomonas salina (Cryptophyceae). J Phycol 27:578–587
Lewitus AJ, Glasgow HB Jr, Burkholder JM (1999) Kleptoplastidy in the toxic dinoflagellate Pfiesteria piscicida (Dinophyceae). J Phycol 35:303–312
Lewitus E, Bittner L, Malviya S, Bowler C, Morlon H (2018) Clade-specific diversification dynamics of marine diatoms since the Jurassic. Nat Ecol Evol 2:1715–1723
Li A, Stoecker DK, Coats DW, Adam EJ (1996) Ingestion of fluorescently labeled and phycoerythrin-containing prey by mixotrophic dinoflagellates. Aquat Microb Ecol 10:139–147
Li B, Lu F, Wei X, Zhao R (2008) Fucoidan: Structure and bioactivity. Molecules 13:1671–1695
Li W, Ding J, Li F, Wang T, Yang Y, Li Y, Campbell DA et al (2019) Functional responses of smaller and larger diatoms to gradual CO2 rise. Sci Total Environ 680:79–90
Li Z, Shin H (2019) Morphology, phylogeny and life cycle of Fragilidium mexicanum Balech (Gonyaulacales, Dinophyceae). Phycologia 58:419–432. https://doi.org/10.1080/00318884.2019.1620582
Lichtlé C (1979) Effects of nitrogen deficiency and light of high intensity on Cryptomonas rufescens (Cryptophyceae). I. Cell and photosynthetic transformations and encystment. Protoplasma 101:283–299
Lichtlé C (1980) Effects of nitrogen deficiency and light of high intensity on Cryptomonas rufescens (Cryptophyceae). II. Excystment. Protoplasma 102:11–19
Lim EL, Dennett MR, Caron DA (1999) The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures. Limnol Oceanogr 44:37–51
Linares C, Vidal M, Canals M, Kersting DK, Amblas D, Aspillaga E, Cebrián E et al (2015) Persistent natural acidification drives major distribution shifts in marine benthic ecosystems. Proc Royal Soc b: Biol Sci 282:20150587
Linnaeus C (1753) Species Plantarum. Stockholm
Linton EW, Triemer RE (1999) Reconstruction of the feeding apparatus in Ploeotia costata (Euglenophyta) and its relationship to other euglenoid feeding apparatuses. J Phycol 35(2):313–324
Linton EW, Hittner D, Lewandowski C, Auld T, Triemer RE (1999) A molecular study of euglenoid phylogeny using small subunit rDNA. J Eukaryot Microbiol 46(2):217–223
Lipinska AP, Toda NRT, Heesch S, Peters AF, Cock JM, Coelho SM (2017) Multiple gene movements into and out of haploid sex chromosomes. Genome Biol 18
Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM et al (2015) Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga Ectocarpus. Mol Biol Evol 32:1581–1597
Lipinska AP, Serrano-Serrano ML, Cormier A, Peters AF, Kogame K, Cock JM, Coelho SM (2019) Rapid turnover of life-cycle-related genes in the brown algae. Genome Biol 20
Lipps JH (1979) Silicoflagellates. Paleontology. Kluwer Academic Publishers, Dordrecht, pp 753–757
Liu F, Wang W, Sun X, Liang Z, Wang F (2014) RNA-Seq revealed complex response to heat stress on transcriptomic level in Saccharina japonica (Laminariales, Phaeophyta). J Appl Phycol 26:1585–1596
Liu F, Wang W, Sun X, Liang Z, Wang F (2015) Conserved and novel heat stress-responsive microRNAs were identified by deep sequencing in Saccharina japonica (Laminariales, Phaeophyta): Heat stress-responsive microRNA in Saccharina. Plant, Cell Environ 38:1357–1367
Liu H, Probert I, Uitz J, Claustre H, Aris-Brosou S, Frada M, Not F, de Vargas C (2009) Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans. Proc Natl Acad Sci USA 106:12803–12808
Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B (2019) Resolution of the backbone phylogeny of mosses using targeted exons from organellar and nuclear genomes. Nat Commun 10:1485
Lobban CS, Honda D, Chihara M, Schefter M (1995) Chrysocystis fragilis gen. nov., sp. nov. (Chrysophyceae, Sarcinochrysidales), with notes on other macroscopic chrysophytes (golden algae) on Guam reefs. Micronesia 28:91–102
Louime C, Fortune J, Gervais G (2017) Sargassum invasion of coastal environments: a growing concern. Am J Environ Sci 13:58–64
Ludwig M, Gibbs SP (1989) Evidence that the nucleomorphs of Chlorarachnion reptans (chlorarachniophyceae) are vestigial nuclei: Morphology, division and DNA-DAPI fluorescence. J Phycol 25:385–394
Lukešová S, Karlicki M, Tomečková Hadariová L, Szabová J, Karnkowska A, Hampl V (2020) Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments. Environ Microbiol Reports 12(1):78–91
Łukomska‐Kowalczyk M, Karnkowska A, Krupska M, Milanowski R, Zakryś B (2016) DNA barcoding in autotrophic euglenids: evaluation of COI and 18S rDNA. J Phycol 52(6):951–960
Lund JWG (1949) Studies on Asterionella. I. The origin and nature of the cells producing seasonal maxima. J Ecol 37:389–419
Lund JWG (1950) Studies on Asterionella formosa Hass. II. Nutrient depletion and the spring maximum. J Ecol 38:15–35
Luo Z, Wang N, Mohamed HF, Liang Y, Pei L, Huang S, Gu H (2021) Amphidinium stirisquamtum sp. nov. (Dinophyceae), a new marine sand-dwelling dinoflagellate with a novel type of body scale. Algae 36:241–261. https://doi.org/10.4490/algae.2021.36.8.27
Luther A (1899) Über Chlorosaccus, eine neue Gattung der Süsswasseralgen, nebst einigen Bemerkungen zur Systematik verwandter Algen. Bihang till Kongl. Svenska vetenskaps-akademiens handlingar 24, Afd. Ill, No 13, p 16
Lynn DH (2017) Ciliophora. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 679–730
Ma X-N, Chen T-P, Yang B, Liu J, Chen F (2016) Lipid production from Nannochloropsis. Mar Drugs 14:61
Maberly SC, Ball LA, Raven JA, Sültemeyer D (2009) Inorganic carbon acquisition by chrysophytes. J Phycol 45:1052–1061
Macaisne N, Liu F, Scornet D, Peters AF, Lipinska A, Perrineau M-M, Henry A et al. (2017) The Ectocarpus immediate upright gene encodes a member of a novel family of cysteine-rich proteins that have an unusual distribution across the eukaryotes. Development
MacDonald JD (1869) On the structure of the diatomaceous frustule and its genetic cycle. Ann Mag Nat Hist 3:1–8
Machado Monteiro CM, Li H, Bischof K, Bartsch I, Valentin KU, Corre E, Collén J et al. (2019) Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima? BMC Plant Biol 19
Mackey DJ, Higgins HW, Mackey MD, Holdsworth D (1998) Algal class abundances in the western equatorial Pacific: Estimation from HPLC measurements of chloroplast pigments using CHEMTAX. Deep-Sea Research Part I - Oceanographic Research Papers 45:1441–1468
Maier UG (1992) The four genomes of the alga Pyrenomonas salina (Cryptophyta). BioSystems 28:69–73
Maistro S, Broady P, Andreoli C, Negrisolo E (2017) Xanthophyceae. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 407–434
Maistro S, Broady PA, Andreoli C, Negrisolo E (2007) Molecular phylogeny and evolution of the order Tribonematales (Heterokonta, Xanthophyceae) based on analysis of plastidial genes rbcL and psaA. Mol Phylogenet Evol 43:407–417
Maistro S, Broady PA, Andreoli C, Negrisolo E (2009) Phylogeny and taxonomy of Xanthophyceae (Stramenopiles, Chromalveolata). Protist 160:412–426
Majda S, Boenigk J, Beisser D (2019) Intraspecific variation in protists: clues for microevolution from Poteriospumella lacustris (Chrysophyceae). Genome Biol Evol 11:2492–2504
Majewska R, Santoro M, Bolaños F, Chaves G, De Stefano M (2015) Diatoms and other epibionts associated with olive ridley (Lepidochelys olivacea) sea turtles from the Pacific coast of Costa Rica. PLoS ONE 10:e0130351
Malviya S, Scalco E, Audic S, Vincent F, Veluchamy A, Poulain J, Wincker P et al (2016) Insights into global diatom distribution and diversity in the world’s ocean. Proc Natl Acad Sci 113:E1516–E1525
Mann DG (1999) The species concept in diatoms. Phycologia 38:437–495
Mann DG, Crawford RM, Round FE (2017) Bacillariophyta. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 205–266
Mann KH (1973) Seaweeds: their productivity and strategy for growth: the role of large marine algae in coastal productivity is far more important than has been suspected. Science 182:975–981
Mann KH (1982) Ecology of coastal waters: a systems approach. University of California Press, Berkeley, p 322
Manning SR, La Claire JW (2010) Prymnesins: Toxic metabolites of the golden alga, Prymnesium parvum Carter (Haptophyta). Mar Drugs 8:678–704
Manton I, Clarke B, Greenwood AD, Flint EA (1952) Further observations on the structure of plant cilia, by a combination of visual and electron microscopy. J Exp Bot 3:204–215
Marin B, Palm A, Klingberg MAX, Melkonian M (2003) Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure. Protist 154(1):99–145
Markel R, Lotterhos K, Robinson C (2017) Temporal variability in the environmental and geographic predictors of spatial-recruitment in nearshore rockfishes. Mar Ecol Prog Ser 574:97–111
Markey DR, Wilce RT (1975) The ultrastructure of reproduction in the brown alga Pylaiella littoralis. I. Mitosis and cytokinesis in the plurilocular gametangia. Protoplasma 85:219–241
Marrs JA, Bouck B (1992) The two major membrane skeletal proteins (articulins) of Euglena gracilis define a novel class of cytoskeletal proteins. J Cell Biol 118:1465–1475
Marshall J-A, Nichols PD, Hallegraeff GM (2002) Chemotaxonomic survey of sterols and fatty acids in six marine raphidophyte algae. J Appl Phycol 14:255–265
Marshall J-A, Nichols PD, Hamilton B, Lewis RJ, Hallegraeff GM (2003) Ichthyotoxicity of Chattonella marina (Raphidophyceae) to damselfish (Acanthochromis polycanthus): the synergistic role of reactive oxygen species and free fatty acids. Harmful Algae 2:273–281
Martin-Cereceda M, Roberts EC, Wootton EC, Bonaccorso E, Dyal P, Guinea A, Rogers D, Wright CJ, Novarino G (2010) Morphology, ultrastructure, and small subunit rDNA phylogeny of the marine heterotrophic flagellate Goniomonas aff. amphinema. J Eukaryot Microbiol 57:159–170
Martins MJF, Mota CF, Pearson GA (2013) Sex-biased gene expression in the brown alga Fucus vesiculosus. BMC Genomics 14:294
Maruyama S, Suzaki T, Weber AP, Archibald JM, Nozaki H (2011) Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids. BMC Evol Biol 11:105
Massana R, Balagué V, Gouillou L, Pedrós-Alió C (2004) Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiol Ecol 50:231–243
Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Gouillou L, Jaillon O, Kooistra WHCF, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C (2015) Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. Environ Microbiol 17:4035–4049
Mautner HG (1954) The chemistry of brown algae. Econ Bot 8:174–192
McCandless EL (1981) Polysaccharides of the seaweeds. In: Lobban CS, Wynne MJ (eds) The biology of Seaweeds. Blackwell Scientific Pubblications, Oxford, pp 559–588
McCartney K (2013) A review of past and recent research on Cretaceous silicoflagellates. Phytotaxa 127:190
McCartney K, Witkowski J (2016) Cenozoic silicoflagellate skeletal morphology: a review and suggested terminology. J Micropalaeont 35:179–189
McCartney K, Witkowski J, Harwood DM (2014a) New insights into skeletal morphology of the oldest known silicoflagellates: Variramus, Cornua and Gleserocha gen. nov. Rev Micropaléontol 57:75–91
McCartney K, Witkowski J, Jordan RW, Daugbjerg N, Malinverno E, van Wezel R, Kano H et al (2014b) Fine structure of silicoflagellate double skeletons. Mar Micropaleontol 113:10–19
McCauley LAR, Wehr JD (2007) Taxonomic reappraisal of the freshwater brown algae Bodanella, Ectocarpus, Heribaudiella, and Pleurocladia (Phaeophyceae) on the basis of rbcL sequences and morphological characters. Phycologia 46:429–439
McFadden GI, Gilson PR, Douglas SE (1994a) The photosynthetic endosymbiont in cryptomonad cells produces both chloroplast and cytoplasmic-type ribosomes. J Cell Sci 107:649–657
McFadden GI, Gilson PR, Hill DRA (1994b) Goniomonas: rRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads. Eur J Phycol 29:29–32
McFadden GI, Gilson PR, Sims IM (1997) Preliminary characterization of carbohydrate stores from chlorarachniophytes (Division: Chlorarachniophyta). Phycol Res 45(3):145–151
McKerracher L, Gibbs SP (1982) Cell and nucleomorph division in the alga Cryptomonas. Can J Bot 60:2440–2452
Medlin L, Zingone A (2007) A taxonomic review of the genus Phaeocystis. Biogeochemistry 83:3–18
Medlin LK (2011) The Permian-Triassic mass extinction forces the radiation of the modern marine phytoplankton. Phycologia 50:684–693
Medlin LK (2015) A timescale for diatom evolution based on four molecular markers: reassessment of ghost lineages and major steps defining diatom evolution. Vie Et Milieu. 65:219–238
Medlin LK (2016) Evolution of the diatoms: major steps in their evolution and a review of the supporting molecular and morphological evidence. Phycologia 55:79–103
Medlin LK, Kooistra WHCF, Potter D, Saunders GW, Andersen RA (1997) Phylogenetic relationships of the ‘golden algae’ (haptophytes, heterokont chromophytes) and their plastids. In: Bhattacharya D (ed) The origins of algae and their plastids, vol 11. Springer, Vienna, pp 187–219
Melkonian M (ed.) (1992) Centrin-mediated cell motility in Algae. In Algal Cell Motility, pp 179–221. Chapman and Hall, New York
Melkonian M, Beech PL, Katsaros C and Schulze D (1992) Centrin-mediated cell motility in algae. In Algal cell motility, pp 179–221. Springer, Boston, MA
Mendez-Tejeda R, Rosado Jiménez GA (2019) Influence of climatic factors on Sargassum arrivals to the coasts of the Dominican Republic. J Oceanogr Mar Sci 10(2):22–32
Merežkowsky C (1879) Studien über Protozoen des norlichen Russland. Arch Mikrosk Anat 16:153–248
Meslet-Cladière L, Delage L, Leroux CJ, Goulitquer S, Leblanc C, Creis E, Gall EA, Stiger-Pouvreau V, Czjzek M, Potin P (2013) Structure/function analysis of a type iii polyketide synthase in the brown alga Ectocarpus siliculosus reveals a biochemical pathway in phlorotannin monomer biosynthesis. Plant Cell 25(8):3089–3103
Meyer SR, Pienaar RN (1984a) Mitosis and cytokinesis in Chroomonas africana Meyer & Pienaar (Cryptophyceae). S Afr J Bot 3:320–330
Meyer SR, Pienaar RN (1984b) The microanatomy of Chroomonas africana sp. nov. (Cryptophyceae) South African J Botany 3:306–319
Michel F, Kazuhiko U, Haruo O (1989) Comparative and functional anatomy of group II catalytic introns—a review. Gene 82(1):5–30
Mignot JP (1962) Study of the cell nucleus of the euglenoid Scytomonas pusilla (Stein) during division and copulation. Comptes Rendus Hebdomadaires Des Seances De L’academie Des Sci 254:1864
Mignot JP (1963) Quelques particularités de l’ultrastructure d’Entosiphon sulcatum (Duj.) Stein, flagellé euglénien. Comptes Rendus Hebdomadaires Des Seances De L’academie Des Sci 257:2530–2533
Mignot JP (1965) Étude ultrastructurale de Cyathomonas truncata From. (flagellé cryptomonadine). J De Microsc 4:239–252
Mignot JP, Joyon L, Pringsheim EG (1968) Compléments à l’étude cytologique des cryptomonadines. Protistologica 4:493–506
Mignot J-P, Brugerolle G (1982) Scale formation in chrysomonad flagellates. J Ultrastruct Res 81:13–26
Milledge JJ, Nielsen BV, Bailey D (2016) High-value products from macroalgae: the potential uses of the invasive brown seaweed, Sargassum muticum. Rev Environ Sci Bio/technol 15:67–88
Mineur F, Arenas F, Assis J, Davies AJ, Engelen AH, Fernandes F, Malta E et al (2015) European seaweeds under pressure: Consequences for communities and ecosystem functioning. J Sea Res 98:91–108
Mitra A, Flynn KJ, Tillmann U, Raven JA, Caron D, Stoecker DK, Not F et al (2016) Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition: incorporation of diverse mixotrophic strategies. Protist 167:106–120
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A et al (2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature 541:536–540
Moeller HV, Johnson MD (2017) Preferential plastid retention by the acquired phototroph Mesodinium chamaeleon. J Eukaryotic Microbiol 265:148–158
Moestrup Ø (1970) On the fine structure of the spermatozoids of Vaucheria sescuplicaria and on the later stages of spermatogenesis. J Mar Biol Ass UK 50:513–523
Moestrup Ø (1995) Current status of chrysophyte “splinter groups”: synurophytes, pedinellids, silicoflagellates. In: Sandgren CD, Smol JP, Kristiansen J (eds) Chrysophyte Algae, 1st edn. Cambridge University Press, pp 75–92
Moestrup Ø, Andersen RA (1991) Organization of heterotrophic heterokonts. In: Patterson DJ, Larsen J (eds) The biology of free-living heterotrophic flagellates, vol 45. Published for the Systematics Association by Clarendon Press; Oxford University Press, England, pp 333–360
Moestrup Ø, Calado AJ (2018) Dinophyceae. Süßwasserflora von Mitteleuropa, Bd 6 - Freshwater Flora of Central Europe, Vol 6, p 561, Dinophyceae. Berlin, Heidelberg: Springer Berlin Heidelberg
Moestrup Ø, Daugbjerg N (2007) On dinoflagellate phylogeny and classification. In Brodie J, Lewis J (eds) Unravelling the Algae: the past, present and future of algae systematics. Boca Raton, London, New York: CRC Press, Taylor & Francis
Moestrup Ø, O’Kelly CJ (2002) Class Silicoflagellata. In: Lee JJ, Leedale GF, Bradbury P (eds) An illustrated guide to the protozoa, vol 2, 2nd edn. Society of Protozoologists, Lawrence, Kansas, USA, pp 775–782
Moestrup Ø, Sengco M (2001) Ultrastructural studies on Bigelowiella natans, gen. et sp. nov., a chlorarachniophyte flagellate. J Phycol 37:624–646
Moestrup Ø, Thomsen HA (1990) Dictyocha speculum (Silicoflagellata, Dictyochophyceae), studies on armoured and unarmoured stages. Kongelige Danske Videnskabernes Selskak. Biologiske Skrifter 37:1–57
Moeys S, Frenkel J, Lembke C, Gillard JTF, Devos V, Van den Berge K, Bouillon B et al. (2016) A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta. Sci Rep 6
Mokranjac D, Neupert W (2009). Thirty years of protein translocation into mitochondria: unexpectedly complex and still puzzling. Biochimica et Biophys Acta (BBA)-Mol Cell Res 1793(1):33–41
Moline MA, Claustre H, Frazer TK, Schofield O, Vernet M (2004) Alteration of the food web along the Antarctic Peninsula in response to a regional warming trend. Glob Change Biol 10:1973–1980
Monfils AK, Triemer RE, Bellairs EF (2011) Characterization of paramylon morphological diversity in photosynthetic euglenoids (Euglenales, Euglenophyta). Phycologia 50(2):156–169
Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409:607–610
Moreno-Garrido I, Codd GA, Gadd GM, Lubián LM (2002) Cu and Zn accumulation by calcium alginate immobilized marine microalgal cells of Nannochloropsis gaditana (Eustigmatophyceae). Ciencias Marinas 28:107–119
Moriya M, Nakayama T, Inouye I (2002) A new class of the stramenopiles, Placididea classis nova: description of Placidia cafeteriopsis gen. et sp. nov. Protist 153:143–156
Morozov AA, Galachyants YP (2019) Diatom genes originating from red and green algae: implications for the secondary endosymbiosis models. Mar Genomics 45:72–78
Morrall S, Greenwood AD (1980) A comparison of the periodic substructures of the trichocysts of the Cryptophyceae and Prasinophyceae. Biosystems 12:71–83
Morya VK, Kim J, Kim E-K (2012) Algal fucoidan: structural and size-dependent bioactivities and their perspectives. Appl Microbiol Biotechnol 93:71–82
Motomura T (1991) Immunofluorescence microscopy of fertilization and parthenogenesis in Laminaria angustata (Phaeophyta). J Phycol 27:248–257
Motomura T, Ichimura T, Melkonian M (1997) Coordinative nuclear and chloroplast division in unilocular sporangia of Laminaria angustata (Laminariales, Phaeophyceae). J Phycol 33:266–271
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D (2009) Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 324:1724–1726
Mueller OF (1786) Animalcula infusoria fluviatilia et marina. Hafniae, 367
Müller KM, Oliveira MC, Sheath RG, Bhattacharya D (2001) Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids. Am J Bot 88:1390–1400
Müller M, Mentel M, van Hellemond JJ, Henze K, Woehle C, Gould SB, Yu RY, van der Giezen M, Tielens AGM, Martin WF (2012) Biochemistry and evolution of anaerobic energy metabolism in eukaryotes. Microbiol Mol Biol Rev 76(2):444–495
Müller OF (1773) Vermium terrestrium et fluviatilium, vol 1 (1). Hauniae, Copenhagen
Müller OF (1783) Om et besønderligt Vaesen i Strandvandet. Nye Samling af det Kongelige Danske Videnskabers Selskabs Skrifter , Copenhagen
Müller OF (1786) Animalcula Infusoria Fluviatilia et Marina. Hauniae, Copenhagen
Murray JM (1981) Control of cell shape by calcium in the Euglenophyceae. J Cell Sci 49:99–117
Nabout JC, Nogueira IS, Oliveira LG (2006) Phytoplankton community of floodplain lakes of the Araguaia River, Brazil, in the rainy and dry seasons. J Plankton Res 28:181–193
Nagai S, Nitshitani G, Tomaru Y, Sakiyama S (2008) Predation by the toxic dinoflagellate Dinophysis fortii on the ciliate Myrionecta rubra and observation of sequestration of ciliate chloroplasts. J Phycol 44:909–922
Nakajima N, Ohki K, Kamiya M (2015) Defense mechanisms of sargassacean species against the epiphytic red alga Neosiphonia harveyi. J Phycol 51:695–705
Nakashima A, Yamada K, Iwata O, Sugimoto R, Atsuji K, Ogawa T, Ishibashi-Ohgo N, Suzuki K (2018) β-Glucan in foods and its physiological functions. J Nutr Sci Vitaminol 64(1):8–17
Nakayama T, Nakamura A, Yokoyama A, Shiratori T, Inouye I, Ishida K (2015) Taxonomic study of a new eustigmatophycean alga, Vacuoliviride crystalliferum gen. et sp. nov. J Plant Res 128:249–257
Nam SW, G D, Son M, Shin W (2013) Ultrastructure of the flagellar apparatus in Rhinomonas reticulata. var. atrorosea (Cryptophyceae, Cryptophyta). Algae 28:331–341
Nam SW, Shin W (2016) Ultrastructure of the flagellar apparatus in cryptomorphic Cryptomonas curvata (Cryptophyceae) with an emphasis on taxonomic and phylogenetic implications. Algae 31:117–128
Nasworthy KC, Scofield AE, Rudstam LG (2020) Feeding ecology of Limnocalanus macrurus in the Laurentian Great Lakes. J Great Lakes Res 46:891–898
Negrisolo E, Maistro S, Incarbone M, Moro I, Dalla Valle L, Broady PA, Andreoli C (2004) Morphological convergence characterizes the evolution of Xanthophyceae (Heterokontophyta): evidence from nuclear SSU rDNA and plastidial rbcL genes. Mol Phylogenet Evol 33:156–170
Neustupa J, Němcová Y (2001) Morphological and taxonomic study for three terrestrial eustigmatophycean species. Nova Hedwigia 123:373–386
Neustupa J, Škaloud P (2010) Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore. Plant Ecol Evol 143(1):51–62
Nicholls KH (1995) Chrysophyte blooms in the plankton and neuston of marine and freshwater systems. In: Sandgren CD, Smol JP, Kristiansen J (eds) Chrysophyte algae, ecology, phylogeny and development. Cambridge University Press, Cambridge, pp 181–213
Nicholls KH, Wujek DE (2015) Chrysophyceae and Phaeothamniophyceae. In Freshwater Algae of North America, pp 537–586. Elsevier
Nichols PD, Volkman JK, Hallegraeff GM, Blackburn SI (1987) Sterols and fatty acids of the red tide flagellates Heterosigma akashiwo and Chattonella antiqua (Raphidophyceae). Phytochemistry 26:2537–2541
Nisbet B (1974) An ultrastructural study of the feeding apparatus of Peranema trichophorum. J Protozool 21(1):39–48
Nishitsuji K, Arimoto A, Higa Y, Mekaru M, Kawamitsu M, Satoh N, Shoguchi E (2019) Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway. Sci Rep 9
Nishitsuji K, Arimoto A, Iwai K, Sudo Y, Hisata K, Fujie M, Arakaki N et al (2016) A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of “mozuku” biology. DNA Res 23:561–570
Nomura M, Atsuji K, Hirose K, Shiba K, Yanase R, Nakayama T, Ishida K-I, Inaba K (2019) Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae. Biol Open 8:bio036590. https://doi.org/10.1242/bio.036590
Not F, Probert I, Gerikas Ribeiro C, Crenn K, Guillou L, Jeanthon C, Vaulot D (2016) Photosymbiosis in marine pelagic environments. In Stal LJ, Cretoiu MS (eds) The marine microbiome: an untapped source of biodiversity and biotechnological potential, pp 305–332. Cham, Springer International Publishing. https://doi.org/10.1007/978-3-319-33000-6_11
Not F, Valentin K, Romari K, Lovejoy C, Massana R, Tobe K, Vaulot D, Medlin LK (2007) Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes. Science 315:253–255
Novarino G (2003) A companion to the identification of cryptomonad flagellates (Cryptophyceae = Cryptomonadea). Hydrobiologia 502:225–270
Novarino G, Lucas IAN, Morrall S (1994) Observations on the genus Plagioselmis (Cryptophyceae). Cryptogamie Algol 15:87–107
O’Kelly CJ (2002) Glossomastix chrysoplasta n. gen., n. sp. (Pinguiophyceae), a new coccoidal, colony-forming golden alga from southern Australia. Phycol Res 50:67–74
O’Neill EC, Trick M, Henrissat B, Field RA (2015) Euglena in time: evolution, control of central metabolic processes and multi-domain proteins in carbohydrate and natural product biochemistry. Perspect Sci 6:84–93
Oakley BR, Dodge JD (1976) The ultrastructure of mitosis in Chroomonas salina. Protoplasma 88:241–254
Ogawa T, Tamoi M, Kimura A, Mine A, Sakuyama H, Yoshida E, Maruta T, Suzuki K, Ishikawa T, Shigeoka S (2015) Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1, 6-/sedoheptulose-1, 7-bisphosphatase leads to increases in biomass and wax ester production. Biotechnol Biofuels 8(1):80
Okamoto N, Chantangsi C, Horák A, Leander BS, Keeling PJ (2009) Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS One 4:e7080
Okamoto N, Inouye I (2005a) The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist 156:163–179
Okamoto N, Inouye I (2005b) A secondary symbiosis in progress? Science 310:287
Okamoto N, Inouye I (2006) Hatena arenicola gen. et sp. nov., a katablepharid undergoing probable plastid acquisition. Protist 157:401–419
Okuda K, Sekida S, Yoshinaga S, Suetomo Y (2004) Cellulose-synthesizing complexes in some chromophyte algae. Cellulose 11:365–376
Olrik K (1998) Ecology of mixotrophic flagellates with special reference to Chrysophyceae in Danish lakes. Hydrobiologia 369:329–338
Onuma R, Hirooka S, Kanesaki Y, Fujiwara T, Yoshikawa H, Miyagishima S (2020) Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellate. ISME J 14:2407–2423
Ota S, Ueda K, Ishida K (2007a) Taxonomic study of Bigelowiella longifila sp. nov. (Chlorarachniophyta) and time-lapse video observation of the unique migration of amoeboid cells. J Phycol 43:333–343
Ota S, Ueda K, Ishida K-I (2005) Lotharella vacuolata sp. nov., a new species of chlorarachniophyte algae, and time-lapse video observations on its unique post-cell division behavior. Phycol Res 53(4):275–286
Ota S, Ueda K, Ishida K-I (2007b) Norrisiella sphaerica gen. et sp. nov., a new coccoid chlorarachniophyte from Baja California, Mexico. J Plant Res 120:661–670
Ota S, Vaulot D (2012) Lotharella reticulosa sp. nov.: A highly reticulated network forming chlorarachniophyte from the Mediterranean Sea. Protist 163:91–104
Ota S, Vaulot D, Le Gall F, Yabuki A, Ishida KI (2009) Partenskyella glossopodia gen. et sp. nov., the first report of a chlorarachniophyte that lacks a pyrenoid. Protist 160(1):137–150
Ott DW, Brown RM (1974) Developmental cytology of the genus Vaucheria II. Sporogenesis in V. fontinalis (L.) Christensen. Brit Phycol J 9:333–351
Ott DW, Hommersand MH (1974) Vaucheriae of North Carolina. I. Marine and brackish water species. J Phycol 10:373–385
Ott DW, Oldham-Ott CK, Rybalka N, Friedl T (2015) Xanthophyte, eustigmatophyte, and raphidophyte algae. In Freshwater Algae of North America, pp 485–536. Elsevier
Overkamp KE, Gasper R, Kock K, Herrmann C, Hofmann E, Frankenberg-Dinkel N (2014) Insights into the biosynthesis and assembly of cryptophycean phycobiliproteins. J Biol Chem 289:26691–26707
Paerschke S, Vollmer AH, Preisfeld A (2017) Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa). Org Divers Evol 17:509–520
Page FC, Blanton RL (1985) The Heterolobosea (Sarcodina: Rhizopoda), a new class uniting the Schizopyrenida and the Acrasidae (Acrasida). Protistologica (Paris. 1965) 21(1):121–132
Painter TJ (1983) Algal polysaccharides. In: Aspinall GO (ed) Polysaccharides. Academic Press, New York, pp 195–285
Palmer JD (2003) The symbiotic birth and spread of plastids: How many times and whodunit? J Phycol 39:4–12. https://doi.org/10.1046/j.1529-8817.2003.02185.x
Palmer JD, Round FE (1967) Persistent, vertical-migration rhythms in benthic microflora. VI. The tidal and diurnal nature of the rythm in the diatom Hantzschia virgata. Biol Bull 132:44–55
Papenfuss GF (1955) Classification of the Algae. In A century of progress in the Natural Sciences (Californian Academy of Sciences), pp 115–224
Parfrey LW, Lahr DJG, Knoll AH, Katz LA (2011) Estimating the timing of early eukaryotic diversification with multigene molecular clocks. Proc Natl Acad Sci 108:13624–13629
Parke M (1949) Studies on marine flagellates. J Marine Biol Assoc 28:255–268, + 2 plates
Pascher A (1913) Chrysomonadinae. In Pascher A (ed.) Die Süsswasserflora Deutschlands Österreichs und der Schweiz (vol 2, pp 7–95). Gustav Fischer Verlag, Stuttgart, Germany
Pascher A (1914) Über Flagellaten und Algen. Berichte Der Deutschen Botanischen Gesellschaft 32:136–160
Pascher A (1921) Über die Übereinstimmung zwischen den Diatomeen Heterokonten und Chrysomonaden. Berichte Der Deutschen Botanischen Gesellschaft 39:236–248
Pascher A (1925) Die braune Algenreihe der Chrysophyceen. Arch Protistenk 52:489–564
Pascher A (1937–1939) Heterokonten. In L Rabenhorst’s Kryptogamen-Flora von Deutschland, Österreich und der Schweiz (2. Aufl., Bd. XI). Leipzig, Akademische Verlagsgesellschaft m.b.h
Patil S, Moeys S, von Dassow P, Huysman MJJ, Mapleson D, De Veylder L, Sanges, R et al. (2015) Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta. BMC Gen 16
Patil V, Källqvist T, Olsen E, Vogt G, Gislerød HR (2007) Fatty acid composition of 12 microalgae for possible use in aquaculture feed. Aquacult Int 15:1–9
Patron NJ, Waller RF, Keeling PJ (2006) A tertiary plastid uses genes from two endosymbionts. J Mol Biol 357:1373–1382. https://doi.org/10.1016/j.jmb.2006.01.084
Patterson DJ (1989) Stramenopiles: chromophytes from a protistan perspective. In Green JC, Leadbeater BSC, Diver WL (eds.) The chromophyte algae: problems and perspectives, systematics Aasociation special volume, No 38, pp 357–379. Clarendon Press, Oxford
Patterson DJ, Larsen J (1992) A perspective on protistan nomenclature. J Protozool 39(1):125–131
Patterson DJ, Hausmann K (1981) The behaviour of contractile vacuole complexes of cryptophycean flagellates. Brit Phycol J 16:429–439
Patterson GW, Tsitsa-Tzardis E, Wikfors GH, Ghosh P, Smith BC, Gladu PK (1994) Sterols of eustigmatophytes. Lipids 29:661–664
Paulsen BS, Viera AAH, Klaveness D (1992) Structure of extracellular polysaccharides produced by a soil Cryptomonas sp. (Cryptophyceae) J Phycol 28:61–63
Pavia H, Toth GB, Lindgren A, Åberg P (2003) Intraspecific variation in the phlorotannin content of the brown alga Ascophyllum nodosum. Phycologia 42:378–383
Pedrós-Alió C, Gasol JM, Guerrero R (1987) On the ecology of a Cryptomonas phaseolus population forming a metalimnetic bloom in Lake Cisó, Spain: annual distribution and loss factors. Limnol Oceanogr 32:285–298
Pellegrini M (1980) Three-dimensional reconstruction of organelles in Euglena gracilis Z.: I. Qualitative and quantitative changes of chloroplasts and mitochondrial reticulum in synchronous photoautotrophic culture. J Cell Sci 43(1):137–166
Pelletreau KN, Bhattacharya D, Price DC, Worful JM, Moustafa A, Rumpho ME (2011) Sea slug kleptoplasty and plastid maintenance in a metazoan. Plant Phys 155:1561–1565. https://doi.org/10.1104/pp.111.174078
Penard E (1890) Über einige neue oder wenig bekannte Protozoen. Jahrbücher Des Nassauischen Vereins Für Naturkunde 43:73–91
Perasso L, Brett SJ, Wetherbee R (1993) Pole reversal and the development of cell asymmetry during division in cryptomonad flagellates. Protoplasma 174:19–24
Perasso L, Hill DRA, Wetherbee R (1992) Transformation and development of the flagellar apparatus of Cryptomonas ovata (Cryptophyceae) during cell division. Protoplasma 170:53–67
Perch-Nielsen K (1985) Cenozoic calcareous nannofossils. In: Bolli HM, Sanders JB, Perch-Nielsen K (eds) Plankton Stratigraphy. Cambridge University Press, Cambridge, pp 427–554
Pereira MJ, Rino J (2001) Ecology of some Euglenophyta taxa. Intern Vereinigung Für Theoretische Und Angewandte Limnologie: Verhandlungen 27(7):3825–3828
Perty M (1849). Über verticale Verbreitung mikroskopischer Lebensformen. Mitth. Naturf. Gesellsch. Bern, 17–45
Peters AF, Scornet D, Ratin M, Charrier B, Monnier A, Merrien Y, Corre E et al (2008) Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus. Development 135:1503–1512
Peters MC, Andersen RA (1993) The flagellar apparatus of Chrysolepidomonas dendrolepidota (Chrysophyceae), a single-celled monad coved with organic scales. J Phycol 29:476–485
Peters MC, Andresen RA (1993) The fine structure and scale formation of Chrysolepidomonas dendrolepidota gen. et nov. (Chrysolepidomadaceae fam. nov. Chrysophyceae). J Phycol 29:469–475
Petrou K, Baker KG, Nielsen DA, Hancock AM, Schulz KG, Davidson AT (2019) Acidification diminishes diatom silica production in the Southern Ocean. Nat Clim Chang 9:781–786
Pfeiffer TJ, Ludwig GM (2007) Small-scale system for the mass production of rotifers using algal paste. N Am J Aquac 69:239–243
Pfister CA, Altabet MA, Weigel BL (2019) Kelp beds and their local effects on seawater chemistry, productivity, and microbial communities. Ecology 100
Pfitzer E (1869) Über Bau und Zelltheilung der Diatomaceen. Sitzungsberichte Der Niederrheinischen Gesellschaft Für Natur- Und Heilkunde Zu Bonn 1869:86–89
Pienaar RN (1976) Virus-like particles in three species of phytoplankton from San Juan Island, Washington. Phycologia 15:185–190
Pithart D (1997) Diurnal vertical migration study during a winter bloom of Cryptophyceae in a floodplain pool. Intern Revue Der Gesamten Hydrobiologie Und Hydrographie 82:33–46
Pombert JF, James ER, Janouškovec J, Keeling PJ (2012) Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome. PLoS ONE 7(12):e53433
Ponce-Toledo RI, Moreira D, López-García P, Deschamps P (2018) Secondary plastids of euglenids and chlorarachniophytes function with a mix of genes of red and green algal ancestry. Mol Biol Evol 35:2198–2204
Porter ME, Sale WS (2000) The 9 + 2 axoneme anchors multiple inner arm dyneins and a network of kinases and phosphatases that control motility. J Cell Biol 151(5):F37-42
Posch T, Eugster B, Pomati F, Pernthaler J, Pitsch G, Eckert EM (2015) Network of interactions between ciliates and phytoplankton during spring. Front Microbiol 6:1289
Potter D, Saunders G, Andersen RA (1997) Phylogenetic relationships of the Raphidophyceae and Xanthophyceae as inferred from nucleotide sequences of the 18S ribosomal RNA gene. Am J Bot 84:966
Poulíčková A, Mayama S, Chepurnov VA, Mann DG (2007) Heterothallic auxosporulation, incunabula and perizonium in Pinnularia (Bacillariophyceae). Eur J Phycol 42(4):367–390
Preisfeld A (2009) A course in Protozoology. Chapter. Euglenida (Euglenophytes) (eds. Röttger R, Knight R and Foissner W) Protozoological Monographs. Shaker-Publishers 4:47–60
Preisfeld A, Berger S, Busse I, Liller S, Ruppel HG (2000) Phylogenetic analyses of various euglenoid taxa based on 18S rDNA sequence data. J Phycol 36:220–226
Preisfeld A, Busse I, Klingberg M, Talke S, Ruppel HG (2001) Phylogenetic position and inter-relationships of the osmotrophic euglenids based on SSU rDNA data, with emphasis on the Rhabdomonadales (Euglenozoa). Int J Syst Evol Microbiol 51:751–758
Preisig HR (1994) Siliceous structures and silicification in flagellated protists. Protoplasma 181:29–42
Preisig HR, Hibberd DJ (1983) Ultrastructure and taxonomy of Paraphysomonas (Chrysophyceae) and related genera 3. Nord J Bot 3:695–723
Přibyl P, Eliáš M, Cepák V, Lukavský J, Kaštánek P (2012) Zoosporogenesis, morphology, ultrastructure, pigment composition, and phylogenetic position of Trachydiscus minutus (Eustigmatophyceae, Heterokontophyta). J Phycol 48:231–242
Pringsheim EG (1936) Zur Kenntnis saprotropher Algen und Flagellaten. Arch Protistenk 87:43–96
Pringsheim EG (1968) Zur Kenntnis der Cryptomonaden des Süßwassers. Nova Hedwigia 16:367–401
Pusztai M, Škaloud P (2019) Elucidating the evolution and diversity of Uroglena-like colonial flagellates (Chrysophyceae): polyphyletic origin of the morphotype. Eur J Phycol 54:404–416
Pusztai M, Škaloud P (2021) Species delimitation within the colonial flagellates Uroglena, Uroglenopsis and Urostipulosphaera (Chrysophyceae). Eur J Phycol 1–17
Quillet M (1955) Sur la nature chimique de la leucosine, polysaccharide de réserve caractéristique des Chrysophycées, extraite d’Hydrurus joetidus. Comptes rendus Hebdomadaires des séances de l’Académie des Sciences. Paris 240:1001–1003
Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC (2012) Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana. Nat Commun 3
Ragan MA, Chapman DJ (1978) A biochemical phylogeny of the Protists. Elsevier
Raikov IB (1994) The diversity of forms of mitosis in protozoa: a comparative review. Eur J Protistol 30(3):253–269
Rajanikanth A (1989) A fossil marine brown alga from the Gangapur formation, Pranhita-Godavari Garben. Curr Sci 58:78–80
Raux E, Schubert HI, Warren MJ (2000) Biosynthesis of cobalamin (vitamin B 12): a bacterial conundrum. Cell Mol Life Sci 57:1880–1893
Ravel-Chapuis P (1988) Nuclear rDNA in Euglena gracilis: paucity of chromosomal units and replication of extrachromosomal units. Nucleic Acids Res 16(11):4801–4810
Raven JA (2003) Long-distance transport in non-vascular plants: Long-distance transport in non-vascular plants. Plant, Cell Environ 26:73–85
Raven JA (1995) Comparative aspects of chrysophytes nutrition with emphasis on carbon, phosphorous and nitrogen. In: Sandgren CD, Smol JP, Kristiansen J (eds) Chrysophyte algae: ecology, phylogeny and development. Cambridge University Press, Cambridge, UK, pp 95–118
Raven JA (2010) Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynth Res 106:123–134
Raven JA, Giordano M (2017) Acquisition and metabolism of carbon in the Ochrophyta other than diatoms. Philos Trans Royal Society b: Biol Sci 372:20160400
Raven JA, Waite AM (2004) The evolution of silicification in diatoms: inescapable sinking and sinking as escape? New Phytologistogist 162:45–61
Reguera B, Velo-Suárez L, Raine R, Park MG (2012) Harmful Dinophysis species: A review. Harmful Algae 14:87–106
Reith A (1980) Xanthophyceae, part 4. In: Ettl H, Gerloff HJ, Heynig H (eds) Süsswasserflora von Mitteleuropa, vol 3. Teil 2. Stuttgart, Germany, Gustav Fischer Verlag, pp 1–147
Reize IB, Melkonian M (1989) A new way to investigate living flagellated/ciliated cells in the light microscope: immobilization of cells in agarose. Botanica Acta 102:145–151
Remias D, Procházková L, Nedbalová L, Andersen RA, Valentin K (2020) Two new Kremastochrysopsis species, K. austriaca sp. nov. and K. americana sp. nov. (Chrysophyceae). J Phycol 56:135–145
Renaud SM, Parry DL, Thinh L-V, Kuo C, Padovan A, Sammy N (1991) Effect of light intensity on the proximate biochemical and fatty acid composition of Isochrysis sp. and Nannochloropsis oculata for use in tropical aquaculture. J Appl Phycol 3:43–53
Renaudie J (2016) Quantifying the Cenozoic marine diatom deposition history: links to the C and Si cycles. Biogeosciences 13:6003–6014
Riaux-Gobin C, Stumm K (2006) Modern Archaeomonadaceae from the land-fast ice off Adélie Land, East Antarctica: a preliminary report. Antarct Sci 18:51–60
Richards TA, Vepritskiy AA, Gouliamova DE, Nierzwicki-Bauer SA (2005) The molecular diversity of freshwater picoeukaryotes from an oligotrophic lake reveals diverse, distinctive and globally dispersed lineages. Environ Microbiol 7:1413–1425
Richier S, Achterberg EP, Humphreys MP, Poulton AJ, Suggett DJ, Tyrrell T, Moore CM (2018) Geographical CO2 sensitivity of phytoplankton correlates with ocean buffer capacity. Glob Change Biol 24:4438–4452
Riisberg I, Orr RJS, Kluge R, Shalchian-Tabrizi K, Bowers HA, Patil V, Edvardsen B et al (2009) Seven gene phylogeny of heterokonts. Protist 160:191–204
Ritchie RJ (2008) Fitting light saturation curves measured using modulated fluorometry. Photosynth Res 96:201–215
Rizouli A, Küpper FC, Louizidou P, Mogg AOM, Azzopardi E, Sayer MDJ, Kawai H et al (2020) The minute alga Schizocladia ischiensis (Schizocladiophyceae, Ochrophyta) isolated by germling emergence from 24 m depth off Rhodes (Greece). Diversity 12:102
Roberts EC, Laybourn-Parry J (1999) Mixotrophic cryptophytes and their predators in the Dry Valley lakes of Antarctica. Freshw Biol 41:737–746
Roberts KR (1984) Structure and significance of the cryptomonad flagellar apparatus. I. Cryptomonas ovata (Cryptophyta). J Phycol 20:590–599
Roberts KR, Stewart KD, Mattox KR (1981) The flagellar apparatus of Chilomonas paramecium Cryptophyceae and its comparison with certain zooflagellates. J Phycol 17:159–167
Robertson DL, Tartar A (2006) Evolution of glutamine synthetase in heterokonts: evidence for endosymbiotic gene transfer and the early evolution of photosynthesis. Mol Biol Evol 23:1048–1055
Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ (2007) The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol 24:54–62
Roleda MY, Hurd CL (2012) Seaweed responses to ocean acidification. In: Wiencke C, Bischof K (eds) Seaweed biology. Springer, Berlin Heidelberg, Berlin, Heidelberg, pp 407–431
Rosati G, Verni F, Barsanti L, Passarelli V, Gualtieri P (1991) Ultrastructure of the apical zone of Euglena gracilis: photoreceptors and motor apparatus. Electron Microsc Rev 4(2):319–342
Rosenberg M (1930) Die geschlechtliche Fortpflanzung von Botrydium granulatum Grev. Oesterreichiche Botanische Zeitschrift 79:289–296
Roshchin AM (1994) Zhiznennye tsikly diatomovykh vodoroslej. Naukova Dumka, Kiev
Rosiere TK, Marrs JA, Bouck GB (1990) A 39-kD plasma membrane protein (IP39) is an anchor for the unusual membrane skeleton of Euglena gracilis. J Cell Biol 110(4):1077
Rostanfinski I (1882) L'Hydrurus et ses affinités. Ann Sci Nat Bot VI 14:1–25
Rostafiński J, Woronin M (1877) Über Botrydium granulatum. Bot Zig 35:649-671
Rothhaupt KO (1996) Laboratorary experiments with a mixotrophic chrysophyte and obligately phagotrophic and photographic competitors. Ecology 77:716–724
Rothpletz A (1900) Über einen neuen jurassischen Hornschwämme und die darin eingeschlossenen Diatomeen. Zeitschrift Der Deutschen Geologischen Gesellschaft 52:154–160
Round FE (1971) The taxonomy of the Chlorophyta. II, Brit Phycol J 6(2):235–264
Round FE (1981) The ecology of algae, p 653. Cambridge University Press, Cambridge [Eng.], New York
Round FE, Crawford RM (1981) The lines of evolution of the Bacillariophyta. I. Origin. Proceedings of the Royal Society of London. Series B. Biol Sci 211:237–620
Round FE, Crawford RM (1984) The lines of evolution of the Bacillariophyta - II. The centric series. Proceedings of the Royal Society of London. Series B. Biol Sci 221:169–188
Round FE, Crawford RM, Mann DG (1990) The diatoms: biology & morphology of the genera, p 747. Cambridge University Press, Cambridge [England], New York
Rowan KS (1989) Photosynthetic pigments of algae, p 334. Cambridge University Press, Cambridge [England]; New York
Roy J, Faktorová D, Lukeš J, Burger G (2007) Unusual mitochondrial genome structures throughout the Euglenozoa. Protist 158(3):385–396
Ruban AV (2016) Nonphotochemical chlorophyll fluorescence quenching: mechanism and effectiveness in protecting plants from photodamage. Plant Physiol 170:1903–1916
Ruggiero MA, Gordon DP, Orrell TM, Bailly N, Bourgoin T, Brusca RC, Cavalier-Smith T et al (2015) A higher level classification of all living organisms. PLoS ONE 10:e0119248
Rugiu L, Panova M, Pereyra RT, Jormalainen V (2020) Gene regulatory response to hyposalinity in the brown seaweed Fucus vesiculosus. BMC Genom 21
Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS, Bhattacharya D, Moustafa A, Manhart JR (2008) Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proc Nat Academy Sci 105:17867–17871. https://doi.org/10.1073/pnas.0804968105
Rusterholz PM, Hansen PJ, Daugbjerg N (2017) Evolutionary transition towards permanent chloroplasts? - Division of kleptochloroplasts in starved cells of two species of Dinophysis (Dinophyceae). PlosOne. https://doi.org/10.1371/journal.pone.0177512
Rybalka N, Andersen RA, Kostikov I, Mohr KI, Massalski A, Olech M, Friedl T (2009) Testing for endemism, genotypic diversity and species concepts in Antarctic terrestrial microalgae of the Tribonemataceae (Stramenopiles, Xanthophyceae). Environ Microbiol 11:554–565
Sahoo D, Kumar S (2015) Xanthophyceae, Euglenophyceae and Dinophyceae. In Sahoo D, Seckbach J (eds) The Algae World. Cellular Origin, Life in Extreme Habitats and Astrobiology, vol 26. Springer, Dordrecht
Saito A, Suetomo Y, Arikawa M, Omura G, Mostafa Kamal Khan SM, Kakuta S, Suzaki E, Kataoka K, Suzaki T (2003) Gliding movement in Peranema trichophorum is powered by flagellar surface motility. Cell Motil Cytoskelet 55(4):244–253
Saldarriaga JF, Taylor FJR (2017) Dinoflagellata. In Handbook of the Protists. Archibald JM, Simpson AGB, Slamovits CH, Margulis L, Melkonian M, Chapman DJ,Corliss JO (eds), pp 1–54. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_22-1
Sánchez-Baracaldo P, Raven JA, Pisani D, Knoll AH (2017) Early photosynthetic eukaryotes inhabited low-salinity habitats. Proc Natl Acad Sci 114(37):E7737–E7745. https://doi.org/10.1073/pnas.1620089114
Sanchez-Puerta MV, Delwiche CF (2008) A hypothesis for plastid evolution in chromalveolates. J Phycol 44:1097–1107. https://doi.org/10.1111/j.1529-8817.2008.00559.x
Sanders RW, Porter KG (1988) Phagotrophic phytoflagellates. In: Marshall KC (ed) Advances in microbial ecology. Springer, US, Boston, MA, pp 167–192
Sandgren CD (1981) Characteristics of sexual and asexual resting cyst (statospore) formation in Dinobryon cylindricum Imhof (Chrysophyta). J Phycol 17:199–210
Sandgren CD (1983) Survival strategies of chrysophyte flagellates: Reproduction and formation of resistant spores. In: Fryxell G (ed) Survival strategies in the algae. Cambridge University Press, Cambridge/London/New York, pp 23–48
Sandgren CD, Flanagin J (1986) Heterothallic sexuality and density dependent encystment in the chrysophycean alga Synura petersenii Korsh. J Phycol 22:206–216
Santelices B (1990) Patterns of reproduction, dispersal and recruitment in seaweeds. Oceanog Marine Biol Annual Rev 28(1990):177–276
Santore UJ (1977) Scanning electron microscopy and comparative micromorphology of the periplast of Hemiselmis rufescens, Chroomonas sp., Chroomonas salina and members of the genus Cryptomonas (Cryptophyceae). Brit Phycol J 12:255–270
Santore UJ (1982) The ultrastructure of Hemiselmis brunnescens and Hemiselmis virescens with additional observations on Hemiselmis rufescens and comments on the Hemiselmidaceae as a natural group of the Cryptophyceae. Brit Phycol J 17:81–99
Santore UJ (1984) Some aspects of taxonomy in the Cryptophyceae. New Phytol 98:627–646
Santore UJ, Greenwood AD (1977) The mitochondrial complex in cryptophyceae. Arch Microbiol 112:207–218
Sarai C, Tanifuji G, Nakayama T, Kamikawa R, Takahashi K, Yazaki E, Matsuo E, Miyashita H, Ishida K-i, Iwataki M, Inagaki Y (2020) Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc Nat Acad Sci 117:5364–5375. https://doi.org/10.1073/pnas.1911884117
Sarthou G, Timmermans KR, Blain S, Tréguer P (2005) Growth physiology and fate of diatoms in the ocean: a review. J Sea Res 53:25–42
Sato T, Nagasato C, Hara Y, Motomura T (2014) Cell cycle and nucleomorph division in Pyrenomonas helgolandii (Cryptophyta). Protist 165:113–122
Saunders GW, Potter D, Paskind MP, Andersen RA (1995) Cladistic analyses of combined traditional and molecular data sets reveal an algal lineage. Proc Natl Acad Sci 92:244–248
Saunders GW, Potter D, Andersen RA (1997) Phylogenetic affinities of the Sarcinochrysidales and Chrysomeridales (Heterokonta) based on analyses of molecular and combined data. J Phycol 33:310–318
Savoca MS, Nevitt GA (2014) Evidence that dimethyl sulfide facilitates a tritrophic mutualism between marine primary producers and top predators. Proc Natl Acad Sci 111(11):4157–4161
Schiel DR, Foster MS (2006) The population biology of large brown seaweeds: ecological consequences of multiphase life histories in dynamic coastal environments. Annu Rev Ecol Evol Syst 37:343–372
Schmidt M, Horn S, Ehlers K, Wilhelm C, Schnetter R (2015) Guanchochroma wildpretii gen. et spec. nov. (Ochrophyta) provides new insights into the diversification and evolution of the algal class Synchromophyceae. PLOS One 10:e0131821
Schmidt M, Horn S, Flieger K, Ehlers K, Wilhelm C, Schnetter R (2012) Synchroma pusillum sp. nov. and other new algal isolates with chloroplast complexes confirm the Synchromophyceae (Ochrophyta) as a widely distributed group of amoeboid algae. Protist 163:544–559
Schmitz K, Srivastava LM (1976) The fine structure of the sieve elements of Nereocystis lütkeana. Am J Bot 63:679–693
Schmitz K (1981) Translocation. In: Lobban CS, Wynne MJ (eds) The biology of Seaweeds. Blackwell Scientific, Oxford, UK, pp 534–558
Schnare MN, Gray MW (1990) Sixteen discrete RNA components in the cytoplasmic ribosome of Euglena gracilis. J Mol Biol 215(1):73–83
Schnare MN, Gray MW (2011) Complete modification maps for the cytosolic small and large subunit rRNAs of Euglena gracilis: functional and evolutionary implications of contrasting patterns between the two rRNA components. J Mol Biol 413(1):66–83
Schnepf E, Deichgräber G (1969) Über die Feinstruktur von Synura petersenii unter besonderer Berücksichtigung der Morphogenese ihrer Kieselschuppen. Protoplasma 68:85–106
Schnepf E, Elbrächter M (1988) Cryptophycean-like double membrane-bound chloroplast in the dinoflagellate, Dinophysis Ehrenb.: Evolutionary, phylogenetic and toxicological implications. Botanica Acta 101:196–203. https://doi.org/10.1111/j.1438-8677.1988.tb00033.x
Schnepf E, Elbrächter M (1992) Nutritional strategies in dinoflagellates: a review with emphasis on cell biological aspects. Eur J Protistol 28:3–24. https://doi.org/10.1016/S0932-4739(11)80315-9
Schnepf E, Elbrächter M (1999) Dinophyte chloroplasts and phylogeny - a review. Grana 38:81–97. https://doi.org/10.1080/00173139908559217
Schnepf E, Feith R (1992) Experimental studies to modify the number of endocytic bacteria in Cryptomonas strain SAG-2580 (Cryptophyceae) and their lysis by bacteriophages. Arch Protistenk 142:95–100
Schnepf E, Melkonian M (1990) Bacteriophage-like particles in endocytic bacteria of Cryptomonas (Cryptophyceae). Phycologia 29:338–343
Schnepf E, Winter S, Mollenhauer D (1989) Gymnodinium aeruginosum (Dinophyta): a blue-green dinoflagellate with a vestigial, anucleate, cryptophycean endosymbiont. Plant Syst Evol 164:75–91
Schoenichen W, Eyferth B (1925) Einfachste Lebensformen des Tier-und Pflanzenreiches: Naturgeschichte der mikroskopischen Süßwasserbewohner. Bermühler
Schoenwaelder MEA (2002) The occurrence and cellular significance of physodes in brown algae. Phycologia 41:125–139
Scholz MJ, Weiss TL, Jinkerson RE, Jing J, Roth R, Goodenough U, Posewitz MC et al (2014) Ultrastructure and composition of the Nannochloropsis gaditana cell wall. Eukaryot Cell 13:1450–1464
Schwartzbach SD, Shigeoka S (eds) (2017) Euglena: Biochemistry, cell and molecular biology (Vol. 979). Springer, Berlin
Schweikert M, Elbrächter M (2004) First ultrastructural investigations of the consortium between a phototrophic eukaryotic endocytobiont and Podolampas bipes (Dinophyceae). Phycologia 43:614–623. https://doi.org/10.2216/i0031-8884-43-5-614.1
Seckbach J (ed) (2019) Diatoms: fundamentals and applications, p 1. Wiley; Scrivener, Hoboken, New Jersey : Salem, Massachusetts
Seckbach J, Kociolek P (eds) (2011) The diatom world. Springer, Netherlands, Dordrecht
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J et al. (2018) Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nat Commun 9
Seenivasan R, Sausen N, Medlin LK, Melkonian M (2013) Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as ‘picobiliphytes’. PLoS ONE 8(3):e59565
Sekiguchi H, Kawachi M, Nakayama T, Inouye I (2003) A taxonomic re-evaluation of the Pedinellales (Dictyochophyceae), based on morphological, behavioural and molecular data. Phycologia 42:165–182
Sekiguchi H, Moriya M, Nakayama T, Inouye I (2002) Vestigial chloroplasts in heterotrophic stramenopiles Pteridomonas danica and Ciliophrys infusionum (Dictyochophyceae). Protist 153:157–167
Semchonok DA, Mondal J, Cooper CJ, Schlum K, Li M, Amin M, Soranzo COS, Ramírez-Aportela E, Kastritis PL, Boekema EJ, Guskov A, Bruce BD (2021) Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium. Plant Commun. https://doi.org/10.1016/j.xplc.2021.100248
Senn G (1900). Flagellata. In Engler A, Prantl K (eds), Die Natürlichen Pflanzenfamilien, Teil 1, Abt. 1
Senthilkumar K, Ramajayam G, Venkatesan J, Kim S –K, Ahn B –C (2017) Biomedical applications of fucoidan, seaweed polysaccharides. In Seaweed Polysaccharides, pp 269–281. Elsevier
Sepsenwol S (1973) Leucoplast of the cryptomonad Chilomonas paramecium. Exp Cell Res 76:395–409
Ševčíková T, Horák A, Klimeš V, Zbránková V, Demir-Hilton E, Sudek S, Jenkins J et al. (2015) Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte? Sci Rep 5
Ševčíková T, Klimeš V, Zbránková V, Strnad H, Hroudová M, Vlček Č, Eliáš M (2016) A comparative analysis of mitochondrial genomes in eustigmatophyte algae. Genome Biol Evol 8:705–722
Ševčíková T, Yurchenko T, Fawley KP, Amaral R, Strnad H, Santos LMA, Fawley MW et al (2019) Plastid genomes and proteins illuminate the evolution of eustigmatophyte algae and their bacterial endosymbionts. Genome Biol Evol 11:362–379
Shalchian-Tabrizi K, Bråte J, Logares R, Klaveness D, Berney C, Jakobsen KS (2008) Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environ Microbiol 10:2635–2644
Shalchian-Tabrizi K, Eikrem W, Klaveness D, Vaulot D, Minge MA, LeGall F, Romari K, Throndsen J, Botnen A, Massana R, Thomsen HA, Jakobsen KS (2006) Telonemia, a new protist phylum with affinity to chromist lineages. Proc R Soc B 273:1833–1842
Sheath RG, Hellebust JA, Sawa T (1975) The statospore of Dinobryon divergens Imhof: formation and germination in a subarctic lake. J Phycol 11:131–138
Sheveleva EV, Hallick RB (2004) Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res 32(2):803–810
Shibata T, Fujimoto K, Nagayama K, Yamaguchi K, Nakamura T (2002a) Inhibitory activity of brown algal phlorotannins against hyaluronidase. Int J Food Sci Technol 37:703–709
Shibata T, Yamaguchi K, Nagayama K, Kawaguchi S, Nakamura T (2002b) Inhibitory activity of brown algal phlorotannins against glycosidases from the viscera of the turban shell Turbo cornutus. Eur J Phycol 37:493–500
Shiratori T, Ishida K (2016) A new heterotrophic cryptomonad: Hemiarma marina n. g., n. sp. J Eukaryot Microbiol 63:804–812
Sibbald SJ, Archibald JM (2020) Genomic insights into plastid evolution. Genome Biol Evol 12:978–990. https://doi.org/10.1093/gbe/evaa096
Sieburth JM, Johnson PW, Hargraves PE (1988) Ultrastructure and ecology of Aureococcus anophageferens gen. et sp. nov. (Chrysophyceae): the dominant picoplankter during a bloom in Narragansett Bay, Rhode Island, summer 1985. J Phycol 24:416–425
Siemińska J (2015) On the age of fossil diatoms. Acta Palaeobot 55:115–117. https://doi.org/10.1515/acpa-2015-0007
Silberfeld T, Leigh JW, Verbruggen H, Cruaud C, de Reviers B, Rousseau F (2010) A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the “brown algal crown radiation.” Mol Phylogenet Evol 56:659–674
Silva PC (1980) Names of classes and families of living algae: with special reference to their use in the Index nominum genericorum (plantarum). Bohn, Scheltema & Holkema; Junk, Utrecht; The Hague, p 156
Silver MW, Mitchell JG, Ringo DL (1980) Siliceous nanoplankton. II. Newly discovered cysts and abundant choanoflagellates from the Weddell Sea, Antarctica. Marine Biol 58:211–217
Simpson AG (1997) The identity and composition of the Euglenozoa. Arch Protistenk 148(3):318–328
Sims PA, Mann DG, Medlin LK (2006) Evolution of the diatoms: insights from fossil, biological and molecular data. Phycologia 45:361–402
Sineshchekov OA, Govorunova EG, Jung KH, Zauner S, Maier UG, Spudich JL (2005) Rhodopsin-mediated photoreception in cryptophyte flagellates. Biophys J 89:4310–4319
Sineshchekov OA, Govorunova EG, Li H, Wang Y, Melkonian M, Wong GKS, Brown LS, Spudich JL (2020) Conductance mechanisms of rapidly desensitizing cation channelrhodopsins from Cryptophyte Algae. mBio 11(2):e00657–20
Singh UB, Ahluwalia AS (2013) Microalgae: a promising tool for carbon sequestration. Mitig Adapt Strat Glob Change 18:73–95
Siver PA, Hamer JS (1990) Use of extant populations of scaled shrysophytes for the inference of Lakewater pH. Can J Fish Aquat Sci 47:1339–1347
Siver PA, Jo BY, Kim JI, Shin W, Lott AM, Wolfe AP (2015) Assessing the evolutionary history of the class Synurophyceae (Heterokonta) using molecular, morphometric, and paleobiological approaches. Am J Bot 102:921–941
Siver PA, Lott AM (2012) Fossil species of Mallomonas from an Eocene Maar Lake with recessed dome structures: early attempts at securing bristles to the cell covering? Nova Hedwigia 95:517–529
Siver PA, Lott AM, Wolfe AP (2009) Taxonomic significance of asymmetrical helmet and lance bristles in the genus Mallomonas (Synurophyceae) and their discovery in Eocene lake sediments. Eur J Phycol 44:447–460
Siver PA, Lott AM, Wolfe AP (2013) A summary of Synura taxa in early Cenozoic deposits from Northern Canada. Nova Hedwig Beih 142:181–190
Siver PA, Marsicano L (1996) Inferring lake trophic status using scaled chrysophytes. Nova Hedwig Beih 114:233–246
Siver PA, Wolfe AP (2005) Scaled chrysophytes in Middle Eocene lake sediments from Northwestern Canada, including descriptions of six new species. Nova Hedwig Beih 128:295–308
Škaloud P, Kalina T, Nemjová K, De Clerck O, Leliaert L (2013) Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). J Phycol 49:115–129
Sleigh MA (1974) The biology of cilia and flagella. Pergamon, London, UK
Sleigh MA (1989) Protozoa and other protists. Edward Arnold, London, UK
Sleigh MA (1991) Mechanisms of flagellar propulsion. Protoplasma 164:45–53
Smol JP, Stoermer EF (eds) (2010) The diatoms: applications for the environmental and earth sciences, 2 ed. Cambridge University Press, Cambridge New York Melbourne Madrid Cape Town Singepore São Paulo Dehli Dubai Tokyo Mexico City, p 667
Smol JP, Charles DF, Whitehead DR (1984) Mallomonadacean (Chrysophyceae) assemblages and their relationships with limnological characteristics in 38 Adirondack (New York) lakes. Can J Bot 62:911–923
Smolander U, Arvola L (1988) Seasonal variation in the diel vertical distribution of the migratory alga Cryptomonas marssonii (Cryptophyceae) in a small, highly humic lake. Hydrobiologia 161:89–98
Sommer MS, Gould SB, Lehmann P, Gruber A, Przyborski JM, Maer UG (2007) Der1- mediated pre-protein import into the periplastid compartment of chromalveolates? Mol Biol Evol 24:918–928
Sorhannus U (2007) A nuclear-encoded small-subunit ribosomal RNA timescale for diatom evolution. Mar Micropaleontol 65:1–12
Spencer DF, Gray MW (2011) Ribosomal RNA genes in Euglena gracilis mitochondrial DNA: fragmented genes in a seemingly fragmented genome. Molec Gen Genom 285(1):19–31
Spencer DF, Collings JC, Schnare MN, Gray MW (1987) Multiple spacer sequences in the nuclear large subunit ribosomal RNA gene of Crithidia fasciculata. EMBO J 6(4):1063–1071
Stancheva R, Škaloud P, Pusztai M, Loflen CL, Sheath RG (2019) First record of the rare freshwater alga Tetrasporopsis fuscescens (Chrysomerophyceae, Ochrophyta) in North America. Fottea 19(2):163–174
Starko S, Bringloe TT, Gomez MS, Darby H, Graham SW, Martone PT (2021) Genomic rearrangements and sequence evolution across brown algal organelles. Gen Biol Evol 13(7). https://doi.org/10.1093/gbe/evab124
Starko S, Soto Gomez M, Darby H, Demes KW, Kawai H, Yotsukura N, Lindstrom SC et al (2019) A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem. Mol Phylogenet Evol 136:138–150
Starmach K (1985) Chrysophyceae und Haptophyceae. In: Ettl H, Gerloff J, Heynig H, Mollenhauer D (eds) Süsswasserflora von Mitteleuropa, vol 1. Gustav Fischer Verlag, Stuttgart, Germany, pp 1–515
Stein F (1878) Der Organismus der Flagellaten. Verlag von Wilhelm Engelmann
Steneck RS, Graham MH, Bourque BJ, Corbett D, Erlandson JM, Estes JA, Tegner MJ (2002) Kelp forest ecosystems: biodiversity, stability, resilience and future. Environ Conserv 29:436–459
Stephens T, Hepburn C (2014) Mass-transfer gradients across kelp beds influence Macrocystis pyrifera growth over small spatial scales. Mar Ecol Prog Ser 515:97–109
Stewart KD, Mattox KR (1980) Phylogeny of phytoflagellates. In: Cox ER (ed) Phytoflagellates. Elsevier, Amsterdam, Netherlands, pp 433–462
Stiller JW, Huang J, Ding Q, Tian J, Goodwillie C (2009) Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses? BMC Genomics 10:484
Stiller JW, Schreiber J, Yue J, Guo H, Ding Q, Huang J (2014) The evolution of photosynthesis in chromist algae through serial endosymbioses. Nat Commun 5:5764
Stock C, Grønlien HK, Allen RD, Naitoh Y (2002) Osmoregulation in Paramecium: in situ ion gradients permit water to cascade through the cytosol to the contractile vacuole. J Cell Sci 115:2339–2348
Stoebe B, Maier UG (2002) One, two, three: nature´s tool box for building plastids. Protoplasma 219:123–130
Stone BA, Clarke AE (1992) Chemistry and boilogy of (1→3)-β-glucans. La Trobe University Press, Bundoora
Stradner H, Allram F (1982) Notes on an enigmatic siliceous cyst, Middle America Trench, Deep Sea Drilling Project Hole 490. Deep Sea Drilling. Initial Rep Deep Sea Drill Proj 66(4):641–642
Strain HH (1951) The pigments of algae. In: Smith GM (ed) Manual of phycology: an introduction to the algae and their biology. Chronica Botanica, Waltham, Massachussetts, USA, pp 243–262
Strassert JFH, Irisarri I, Williams TA, Burki F (2021) A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids. Nat Commun 12:1879. https://doi.org/10.1038/s41467-021-22044-z
Strassert JFH, Jamy M, Mylnikov AP, Tikhonenkov DV, Burki F (2019) New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the Eukaryote tree of life. Mol Biol Evol 36:757–765
Strother PK, Taylor WA, Van De Schootbrugge B, Leander BS, Wellman CH (2020) Pellicle ultrastructure demonstrates that Moyeria is a fossil euglenid. Palynology 44(3):461–471
Sunday JM, Fabricius KE, Kroeker KJ, Anderson KM, Brown NE, Barry JP, Connell SD et al (2017) Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nat Clim Chang 7:81–85
Surek B, Melkonian M (1986) A cryptic cytostome is present in Euglena. Protoplasma 133:39–49
Suutari M, Majaneva M, Fewer DP, Voirin B, Aiello A, Friedl T, Chiarello AG, Blomster J (2010) Molecular evidence for a diverse green algal community growing in the hair of sloths and a specific association with Trichophilus welckeri (Chlorophyta, Ulvophyceae). BMC Evol Biol 10(1):1–12
Suzuki S, Hirakawa Y, Kofuji R, Sugita M, Ishida K (2016) Plastid genome sequences of Gymnochlora stellata, Lotharella vacuolata, and Partenskyella glossopodia reveal remarkable structural conservation among chlorarachniophyte species. J Plant Res 129:581–590
de Széchy MTM, Guedes PM, Baeta-Neves MH, Oliveira EN (2012) Verification of Sargassum natans (Linnaeus) Gaillon (Heterokontophyta: Phaeophyceae) from the Sargasso Sea off the coast of Brazil, western Atlantic Ocean. Check List 8:638
Szczepocka E, Żelazna-Wieczorek J (2018) Diatom biomonitoring – scientific foundations, commonly discussed issues and frequently made errors. Oceanol. Hydrobiol Stud 47(3):313–325
Taggart RE, Parker LR (1976) A new fossil alga from the Silurian of Michigan. Am J Bot 63:1390–1392
Talke S, Preisfeld A (2002) Molecular evolution of euglenozoan paraxonemal rod genes par1 and par2 coincides with phylogenetic reconstruction based on small subunit rDNA data. J Phycol 38(5):995–1003
Tamaki S, Tanno Y, Kato S, Ozasa K, Wakazaki M, Sato M, Toyooka K, Maoka T, Ishikawa T, Maeda M, Shinomura T (2020) Carotenoid accumulation in the eyespot apparatus required for phototaxis is independent of chloroplast development in Euglena gracilis. Plant Sci 298:110564
Tanabe Y, Shitara T, Kashino Y, Hara Y, Kudoh S (2011) Utilizing the effective xanthophyll cycle for blooming of Ochromonas smithii and O. itoi (Chrysophyceae) on the snow surface. PLoS One 6:e14690
Tanifuji G, Archibald JM, Hashimoto T (2016) Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics. Sci Rep 6:21016. https://doi.org/10.1038/srep21016
Tappan H (1980) The paleobiology of plant protists. W. H. Freeman and Company, San Francisco
Taylor DL, Lee CC (1971) A new cryptomonad from antarctica: Cryptomonas cryophila sp. nov. Arch Mikrobiol 75:269–280
Taylor FJR (1976) Flagellate phylogeny: a study in conflicts. J Protozool 23:28–40
Taylor FJR (1992) The taxonomy of harmful marine phytoplankton. G Bot Ital 126:209–219
Taylor FJR, Hoppenrath M, Saldarriaga JF (2008) Dinoflagellate diversity and distribution. Biodivers Conserv 17:407–418
Teagle H, Hawkins SJ, Moore PJ, Smale DA (2017) The role of kelp species as biogenic habitat formers in coastal marine ecosystems. J Exp Mar Biol Ecol 492:81–98
Teas J, Vena S, Cone DL, Irhimeh M (2013) The consumption of seaweed as a protective factor in the etiology of breast cancer: proof of principle. J Appl Phycol 25:771–779. https://doi.org/10.1007/s10811-012-9931-0
Telford WG, Moss MW, Morseman JP, Allnutt FCT (2001) Cryptomonad algal phycobiliproteins as fluorochromes for extracellular and intracellular antigen detection by flow cytometry. Cytometry 44:16–23
Tengs T, Dahlberg OJ, Shalchian-Tabrizi K, Klaveness D, Rudi K, Delwiche CF, Jakobsen KS (2000) Phylogenetic analyses indicate that the 19′hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin. Mole Biol Evol 17:718–729. https://doi.org/10.1093/oxfordjournals.molbev.a026350
Terauchi M, Nagasato C, Inoue A, Ito T, Motomura T (2016) Distribution of alginate and cellulose and regulatory role of calcium in the cell wall of the brown alga Ectocarpus siliculosus (Ectocarpales, Phaeophyceae). Planta 244:361–377
Terauchi M, Nagasato C, Motomura T (2015) Plasmodesmata of brown algae. J Plant Res 128:7–15
Tester PA, Feldman RL, Nau AW, Kibler SR, Wayne Litaker R (2010) Ciguatera fish poisoning and sea surface temperatures in the Caribbean Sea and the West Indies. Toxicon 56:698–710. https://doi.org/10.1016/j.toxicon.2010.02.026
Thakur R, Shiratori T, Ishida K (2019) Taxon-rich multigene phylogenetic analyses resolve the phylogenetic relationship among deep-branching stramenopiles. Protist 170:125682
Thangaraj S, Sun J (2021) Transcriptomic reprogramming of the oceanic diatom Skeletonema dohrnii under warming ocean and acidification. Environ Microbiol 23:980–995
Thomas DN, Dieckmann G (eds) (2003) Sea ice: an introduction to its physics, chemistry, biology, and geology p 402. Blackwell Science, Oxford, UK ; Malden, MA, USA
Thomas F, Cosse A, Le Panse S, Kloareg B, Potin P, Leblanc C (2014) Kelps feature systemic defense responses: insights into the evolution of innate immunity in multicellular eukaryotes. New Phytol 204:567–576
Thompson MD, Copertino DW, Thompson E, Favreau MR, Hallick RB (1995) Evidence for the late origin of introns in chloroplast genes from an evolutionary analysis of the genus Euglena. Nucleic Acids Res 23(23):4745–4752
Thwaites GHK (1847) On conjugation in the Diatomaceae. Ann Mag Nat History, ser. 1, 20, 9–11, 343–344
Tian Y, Gao L, Deng J, Li M (2020) Characterization of phytoplankton community in a river ecosystem using pigment composition: a feasibility study. Environ Sci Pollut Res 27(34):42210–42220
Toriumi S, Takano H (1973) Fibrocapsa, a new genus in chloromonadophyceae from Atsumi Bay, Japan. Bull Tokai Reg Fisher Res Lab 76:25–35
Torres-Machorro AL, Hernández R, Cevallos AM, López-Villaseñor I (2010) Ribosomal RNA genes in eukaryotic microorganisms: witnesses of phylogeny? FEMS Microbiol Rev 34(1):59–86
Tovey DJ, Moss BL (1978) Attachment of the haptera of Laminaria digitata (Huds.) Lamour. Phycologia 17:17–22
Trainer VL, Bates SS, Lundholm N, Thessen AE, Cochlan WP, Adams NG, Trick CG (2012) Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health. Harmful Algae 14:271–300
Tranvik LJ, Porter KG, Sieburth JMcN (1989) Occurrence of bacterivory in Cryptomonas, a common freshwater phytoplankter. Oecologia 78:473–476
Triemer RE (1997) Feeding in Peranema trichophorum revisited (Euglenophyta). J Phycol 33(4):649–654
Triemer RE, Farmer MA (1991a) An ultrastructural comparison of the mitotic apparatus, feeding apparatus, flagellar apparatus and cytoskeleton in euglenoids and kinetoplastids. Protoplasma 164(1–3):91–104
Triemer RE, Farmer MA (1991b) The ultrastructural organization of the heterotrophic euglenids and its evolutionary implications. The biology of free-living heterotrophic flagellates, pp 185–204
Triemer RE, Farmer MA (2007) A decade of euglenoid molecular phylogenetics. In Brodie J, Lewis J (eds) Unravelling the algae: the past, present, and future of algal systematics, pp 315–330
Triemer RE, Fritz L (1987) Structure and Operation of the Feeding Apparatus in a Colorless Euglenoid, Entosiphon sulcatum 1. J Protozool 34(1):39–47
Trzcinska M, Pawlik-Skowronska B, Krokowski D, Watanabe S (2014) Genetic and morphological characteristics of two ecotypes of Eustigmatos calaminaris sp. nov. (Eustigmatophyceae) inhabiting Zn- and Pb-loaded calamine mine spoils. Fottea 14:1–13
Tsuji Y, Yoshida M (2017) Biology of Haptophytes: complicated cellular processes driving global carbon cycle. Adv Bot Res 84:219–261
Turland NJ, Wiersema JH, Barrie FR, Greuter W, Hawksworth DL, Herendeen PS, Smith G et al (2018) International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Koeltz Botanical Books
Turmel M, Gagnon MC, O’Kelly CJ, Otis C, Lemieux C (2009) The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids. Mol Biol Evol 26(3):631–648
Turner S, Pryer KM, Miao VPW, Palmer JD (1999) Investigating deep phylogenetic relationships among Cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol 46:327–338
Tyrrell T, Merico A (2004) Emiliania huxleyi: Bloom observations and the conditions that induce them. In: Thierstein HR, Young JR (eds) Coccolithophores from molecular processes to global impact. Springer-Verlag, Berlin, pp 481–508
Upadhyay AK, Singh NK, Singh R, Rai UN (2016) Amelioration of arsenic toxicity in rice: Comparative effect of inoculation of Chlorella vulgaris and Nannochloropsis sp. on growth, biochemical changes and arsenic uptake. Ecotoxicol Environ Saf 124:68–73
Urabe J, Gurung TB, Yoshida T, Sekino T, Nakanishi M, Maruo M, Nakayama E (2000) Diel changes in phagotrophy by Cryptomonas in Lake Biwa. Limnol Oceanog 45:1558–1563
van den Hoek C (1978) Algen: Einführung in die Phykologie. Georg Thieme Verlag Stuttgart, p 481
van den Hoff J, Bell E, Whittock L (2020) Dimorphism in the antarctic cryptophyte Geminigera cryophila (Cryptophyceae). J Phycol 56:1028–1038
van der Weij-De Wit CD, Doust AB, van Stokkum IHM, Dekker JP, Wilk KE, Curmi PMG, Scholes GD, van Grondelle R (2006) How energy funnels from the phycoerythrin antenna complex to photosystem I and photosystem II in cryptophyte Rhodomonas CS24 cells. J Phys Chem 110:25066–25073
van Leeuwe MA, Webb AL, Venables HJ, Visser RJW, Meredith MP, Elzenga JTM, Stefels J (2020) Annual patterns in phytoplankton phenology in Antarctic coastal waters explained by environmental drivers. Limnol Oceanogr 65:1651–1668
Van Weelden G, Bobiński M, Okła K, Van Weelden WJ, Romano A, Pijnenborg JMA (2019) Fucoidan structure and activity in relation to anti-cancer mechanisms. Mar Drugs 17:32
Vanclová AM, Hadariová L, Hrdá Š, Hampl V (2017) Secondary plastids of euglenophytes. Academic press. Adv Botan Res 84:321–358
Vanormelingen P, Evans KM, Mann DG, Lance S, Debeer A-E, D’Hondt S, Verstraete T et al (2015) Genotypic diversity and differentiation among populations of two benthic freshwater diatoms as revealed by microsatellites. Mol Ecol 24:4433–4448
Vásquez JA, Zuñiga S, Tala F, Piaget N, Rodríguez DC, Vega JMA (2014) Economic valuation of kelp forests in northern Chile: values of goods and services of the ecosystem. J Appl Phycol 26:1081–1088
Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L (2015) An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. Genome Biol 16:102. https://doi.org/10.1186/s13059-015-0671-8
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O’Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Crom SL, Farrant GK, Sgro J-Y, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L (2013) Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum. Nat Commun 4:2091. https://doi.org/10.1038/ncomms3091
Verhaeghe EF, Fraysse A, Guerquin-Kern J-L, Wu T-D, Devès G, Mioskowski C, Leblanc C et al (2008) Microchemical imaging of iodine distribution in the brown alga Laminaria digitata suggests a new mechanism for its accumulation. J Biol Inorg Chem 13:257–269
Vesk M, Dwarte D, Fowler S, Hiller RG (1992) Freeze fracture immunocytochemistry of light- harvesting pigment complexes in a cryptophyte. Protoplasma 170:166–176
Vesk M, Moestrup Ø (1987) The flagellar root system in Heterosigma akashiwo (Raphidophyceae). Protoplasma 137:15–28
Vieira C (2020) Lobophora-coral interactions and phase shifts: summary of current knowledge and future directions. Aquat Ecol 54:1–20
Vischer W (1945) Heterokonten aus Alpinen Boden, Speziell dem Schweizerischen Nationalpark. Ergebnisse Der Wissenschaftlichen Untersuchung Der Schweizerischen Nationalparks 1:481–511
von der Heyden S, Chao EE, Cavalier-Smith T (2004) Genetic diversity of goniomonads: an ancient divergence between marine and freshwater species. Eur J Phycol 39:343–350
Von Stosch HA (1950) Oogamy in a centric diatom. Nature 165:531–532
Votta JJ, Jahn TL, Griffith DL, Fonseca JR (1971) Nature of the flagellar beat in Trachelomonas volvocina, Rhabdomonas spiralis, Menoidium cultellus, and Chilomonas paramecium. Trans Am Microsc Soc 90:404–412
Votýpka J, Modrý D, Oborník M, Šlapeta J, Lukeš J (2017) Apicomplexa. In: Archibald JM, Simpson AGB, Slamovits CH (eds) Handbook of the Protists. Springer International Publishing, Cham, pp 567–624
Vu MTT, Douëtte C, Rayner TA, Thoisen C, Nielsen SL, Hansen BW (2016) Optimization of photosynthesis, growth, and biochemical composition of the microalga Rhodomonas salina—an established diet for live feed copepods in aquaculture. J Appl Phyol 28:1485–1500
Vysotskii AV (1887) Les mastigophores et rhizopodes trouvés dans les lacs Weissowo et Repnoie (près Slaviansk, Gouvern. Kharkov). Trudy Obshchestva Ispytatelei Prirody Pri Imperatorskom Kharkovskom Universitetie 21:119–140
Wada M, Hara Y, Kato M, Yamada M, Fujii T (1987) Diurnal appearance, fine structure, and chemical composition of fatty particles in Heterosigma akashiwo (Raphidophyceae). Protoplasma 137:134–139
Walne PL, Kivic PA (1990) Phylum euglenida. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of protoctista. Jones & Bartlett Publishers, Boston, pp 270–287 (Chapter 15)
Wang D, Ning K, Li J, Hu J, Han D, Wang H, Zeng X et al (2014) Nannochloropsis genomes reveal evolution of microalgal oleaginous traits. PLoS Genet 10:e1004094
Wang DZ (2008) Neurotoxins from marine dinoflagellates: a brief review. Mar Drugs 6:349–371
Wang X, Chen Z, Li Q, Zhang J, Liu S, Duan D (2018) High-density SNP-based QTL mapping and candidate gene screening for yield-related blade length and width in Saccharina japonica (Laminariales, Phaeophyta). Sci Rep 8:13591
Wang S, Li L, Li H, Sahu SK, Wang H, Xu Y, Xian W, Song B, Liang H, Cheng S, Chang Y, Song Y, Çebi Z, Wittek S, Reder T, Peterson M, Yang H, Wang J, Melkonian B, Van De Peer Y, Xu X, Wong GK-S, Melkonian M, Liu H, Liu X (2020) Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. Nat Plants 6:95–106. https://doi.org/10.1038/s41477-019-0560-3
Wang Y, Joly S, Morse D (2008) Phylogeny of dinoflagellate plastid genes recently transferred to the nucleus supports a common ancestry with red algal plastid genes. J Molec Evolut 66:175–184. https://doi.org/10.1007/s00239-008-9070-z
Warming E (1884) Haandbog i den systematiske botanik. Anden gjennemsete udgave. Købnhaven
Watanabe MM, Suda S, Inouya I, Sawaguchi T, Chihara M (1990) Lepidodinium viride gen. et sp. nov. (Gymnodinaiales, Dinophyta), a green dinoflagellate with a chlorophyll a- and b-containing endosymbiont. J Phycol 26:741–751. https://doi.org/10.1111/j.0022-3646.1990.00741.x
Watanabe MM, Takeda Y, Sasa T, Inouye I, Suda S, Sawaguchi T, Chihara M (1987) A green dinoflagellate with chlorophylls a and b: Morphology, fine structure of the chloroplast and chlorophyll composition. J Phycol 23:382–389. https://doi.org/10.1111/j.1529-8817.1987.tb04148.x
Wawrik F (1969) Sexualität bei Cryptomonas sp. und Chlorogonium maximum. Nova Hedwigia 8:283–292
Wawrik F (1971) Zygoten und Cysten bei Stenocalyx klarnetii (Bourr.) Fott, Stenocalyx inkonstans Schmid und Chroomonas acuta Uterm. Nova Hedwigia 21:599–604
Wawrik F (1972) Isogame Hologamie in der Gattung Mallomonas Perty. Nova Hedwigia 23:353–362
Wawrik F (1979) Eisschluß und Eisbruchvegetation in den Teichen des nördlichen Waldviertels 1977/1978. Arch Protistenk 122:247–266
Wedemayer GJ, Wemmer DE, Glazer AN (1991) Phycobilins of cryptophycean algae. Structures of novel bilins with acryloyl substituents from phycoerythrin 566. J Biol Chem 266:4731–4741
Wegener Parfrey L, Grant J, Tekle YI, Lasek-Nesselquist E, Morrison HG. Sogin ML, Patterson DJ, Katz LA (2010) Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life. Syst Biol 59:518–533
Weisberg RH, Liu Y, Lembke C, Hu C, Hubbard K, Garrett M (2019) The coastal ocean circulation influence on the 2018 West Florida Shelf K. brevis red tide bloom. J Geophy Res Oceans 124:2501–2512
Wernberg T, Krumhansl K, Filbee-Dexter K, Pedersen MF (2019) Status and trends for the world’s kelp forests. In World Seas: An Environmental Evaluation, pp 57–78. Elsevier
Wetherbee R, Andersen RA (1992) Flagella of a chrysophycean alga play an active role in prey capture and selection: direct observations on Epipyxis pulchra using image enhanced video microscopy. Protoplasma 166:1–7
Wetherbee R, Bringloe TT, Costa JF, Meene A, Andersen RA, Verbruggen H (2021) New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class. J Phycol 57:396–411
Wetherbee R, Gornik SG, Grant B, Waller RF (2015) Andersenia, a genus of filamentous, sand-dwelling Pelagophyceae from southeastern Australia. Phycologia 54:35–48
Wetherbee R, Jackson CJ, Repetti SI, Clementson LA, Costa JF, Meene A, Crawford S et al (2019) The golden paradox - a new heterokont lineage with chloroplasts surrounded by two membranes. J Phycol 55:257–278
Whittle SJ, Casselton PJ (1975a) The chloroplast pigments of the algal classes Eustigmatophyceae and Xanthophyceae. I. Eustigmatophyceae. British Phycol J 10:179–191
Whittle SJ, Casselton PJ (1975b) The chloroplast pigments of the algal classes Eustigmatophyceae and Xanthophyceae II Xanthophyceae. British Phycol J 10:192–204
Whittle SJ, Casselton PJ (1969) The chloroplast pigments of some green and yellow-green algae. Brit Phycol J 4:55–64
Wiech H, Geier BM, Paschke T, Spang A, Grein K, Steinkötter J, Melkonian M, Schiebel E (1996) Characterization of green alga, yeast, and human centrins specific subdomain features determine functional diversity. J Biol Chem 271(37):22453–22461
Wiegert KE, Bennett MS, Triemer RE (2012) Evolution of the chloroplast genome in photosynthetic euglenoids: a comparison of Eutreptia viridis and Euglena gracilis (Euglenophyta). Protist 163(6):832–843
Wiegert KE, Bennett MS, Triemer RE (2013) Tracing patterns of chloroplast evolution in euglenoids: contributions from Colacium vesiculosum and Strombomonas acuminata (Euglenophyta). J Eukaryot Microbiol 60(2):214–221
Wilhelm C, Rudolph I, Renner W (1991) A quantitative method based on HPLC-aided pigment analysis to monitor structure and dynamics of the phytoplankton assemblage – a study from lake Meerfelder Maar (Eifel, Germany). Arch Hydrobiol 123:21–35
Wilk KE, Harrop SJ, Jankova L, Edler D, Keenan G, Sharples F, Hiller RG, Curmi PMG (1999) Evolution of a light-harvesting protein by addition of new subunits and rearrangement of conserved elements: crystal structure of a cryptophyte phycoerythrin at 1.63-Å resolution. Proc Nat Acad Sci USA 96:8901–8906
Willey JM (1972) The damselfly (Odonata) hindgut as host organ for the euglenoid flagellate Colacium. Trans Am Microsc Soc 91:583–593
Willey RL, Wibel RG (1985) A cytostome/cytopharynx in green euglenoid flagellates (Euglenales) and its phylogenetic implications. BioSystems 18(3–4):369–376
Williams DM (1991) Phylogenetic relationships among the Chromista: a review and preliminary analysis. Cladistics 7:141–156
Williams DM (2020) Diatom classifications: what purpose do they serve?. In Cristóbal G, Blanco S, Bueno G (eds) Modern trends in diatom identification. Developments in Applied Phycology, vol 10, pp 11–24. Springer, Cham
Wood BJB (1988) Lipids of algae and protozoa. In: Ratledge C, Wilkinson SG (eds) Microbial lipids. Academic Press, London, pp 807–867
Wood G, Marzinelli EM, Vergés A, Campbell AH, Steinberg PD, Coleman MA (2020) Using genomics to design and evaluate the performance of underwater forest restoration. J Appl Ecol 57:1988–1998
Wright SW, Jeffrey SW, Mantoura RFC, Llewellyn CA, Bjørnland T, Repeta D, Welschmeyer N (1991) Improved HPLC method for the analysis of chlorophylls and carotenoids from marine phytoplankton. Mar Ecol Prog Ser 77:183–196
Wright SW, van den Enden RL (2000) Phytoplankton community structure and stocks in the East Antarctic marginal ice zone (BROKE survey, January}March 1996) determined by CHEMTAX analysis of HPLC pigment signatures. Deep-Sea Res II 47:2363–2400
Wu Y, Campbell DA, Irwin AJ, Suggett DJ, Finkel ZV (2014) Ocean acidification enhances the growth rate of larger diatoms. Limnol Oceanogr 59:1027–1034
Wujek DE, Kristiansen J (1978) Observations on bristle- and scale-production in Mallomonas caudata (Chrysophyceae). Arch Protistenk 120:213–221
Wynne MJ, Andersen RA, Graf L, Yoon HS (2014) Aureoscheda, a new genus of marine pelagophyceae from the Bahamas, Caribbean Sea. Phycologia 53:513–522
Xiao S, Knoll AH, Yuan X (1998) Morphological reconstruction of Miaohephyton bifurcatum, a possible brown alga from the Neoproterozoic Doushantuo Formation, South China. J Paleont 72:1072–1086. https://doi.org/10.1017/S0022336000027414
Yabuki A, Inagaki Y, Ishida K (2010) Palpitomonas bilix gen. et sp. nov.: a novel deep- branching heterotroph possibly related to Archaeplastida or Hacrobia. Protist 161:523–538
Yabuki A, Kamikawa R, Ishikawa SA, Koliska M, Kim E, Tanabe AS, Kume K, Ishida K, Inagaki Y (2014) Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista. Sci Rep 4:4641
Yamada N, Bolton JJ, Trobajo R, Mann DG, Dąbek P, Witkowski A, Onuma R, Horiguchi T, Kroth PG (2019) Discovery of a kleptoplastic ‘dinotom’ dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids. Sci Rep 9:10474. https://doi.org/10.1038/s41598-019-46852-y
Yamada N, Sakai H, Onuma R, Kroth PG, Horiguchi T (2020) Five non-motile dinotom dinoflagellates of the genus Dinothrix. Front Plant Sci 11. https://doi.org/10.3389/fpls.2020.591050
Yamada N, Sym SD, Horiguchi T (2017) Identification of highly divergent diatom-derived chloroplasts in dinoflagellates, including a description of Durinskia kwazulunatalensis sp. nov. (Peridiniales, Dinophyceae). Mol Biol Evol 34:1335–1351. https://doi.org/10.1093/molbev/msx054
Yamaguchi A, Yubuki N and Leander BS (2012) Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida). BMC Evolut Biol 12(1):29
Yamaguchi H, Hoppenrath M, Takishita K, Horiguchi T (2008) Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol Res 56:127–138
Yamaguchi H, Nakayama T, Kal A, Inouye I (2011) Taxonomy and phylogeny of a new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov. (Gymnodiniales, Dinophyceae), and its cryptophyte symbiont. Protist 162:650–667
Yamaguchi H, Nakayama T, Murakami A, Inouye I (2010) Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. J Plant Res 123:333–342
Yamaguchi M, Imai I (1994) A microfluorometric analysis of nuclear DNA at different stages in the life history of Chattonella antiqua and Chattonella marina (Raphidophyceae). Phycologia 33:163–170
Yang EC, Boo GH, Kim HJ, Cho SM, Boo SM, Andersen RA, Yoon HS (2012) Supermatrix data highlight the phylogenetic relationships of photosynthetic Stramenopiles. Protist 163:217–231
Yang X, Wang X, Yao J, Duan D (2021) Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with sporophyte development of Saccharina japonica. Int J Mol Sci 22:9877
Ye N, Zhang X, Miao M, Fan X, Zheng Y, Xu D, Wang J et al. (2015). Saccharina genomes provide novel insight into kelp biology. Nat Commun 6
Yip ZT, Quek RZB, Huang D (2020) Historical biogeography of the widespread macroalga Sargassum (Fucales, Phaeophyceae). J Phycol 56:300–309
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D (2004) A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol 21:809–818
Yoon HS, Hackett JD, Van Dolah FM, Nosenko T, Lidie KL, Bhattacharya D (2005) Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. Mol Biol Evol 22:1299–1308. https://doi.org/10.1093/molbev/msi118
Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D (2011) Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332:714–716
Yoon HS, Hackett JD, Pinto G, Bhattacharya D (2002) The single, ancient origin of chromist plastids. Proc Natl Acad Sci 99:15507–15512
Yu M, Ashworth MP, Hajrah NH, Khiyami MA, Sabir MJ, Alhebshi AM, Al-Malki AL et al. (2018) Evolution of the plastid genomes in diatoms. In Advances in Botanical Research, pp 129–155. Elsevier
Yubuki N, Edgcomb VP, Bernhard JM, Leander BS (2009) Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria. BMC Microbiol 9(1):16
Yubuki N, Leander BS (2012) Reconciling the bizarre inheritance of microtubules in complex (euglenid) microeukaryotes. Protoplasma 249(4):859–869
Yubuki N, Leander BS (2018) Diversity and evolutionary history of the Symbiontida (Euglenozoa). Front Ecol Evol 6:100
Yubuki N, Simpson AG, Leander BS (2013) Reconstruction of the feeding apparatus in Postgaardi mariagerensis provides evidence for character evolution within the Symbiontida (Euglenozoa). Eur J Protistol 49(1):32–39
Zakryś B (1986) The nuclear behaviour during abnormal cell division in Euglena viridis Ehrbg. Nova Hedwigia 42:591–596
Zakryś B, Milanowski R, Karnkowska A (2017). Evolutionary origin of Euglena. In Schwartzbach SD, Shigeoka S (eds), Euglena: Biochemistry, Cell and Molecular Biology, pp 3–17. Berlin: Springer, Cham
Zhang J, Yao J, Hu Z, Jueterbock A, Yotsukura N, Krupnova TN, Nagasato C et al (2019) Phylogeographic diversification and postglacial range dynamics shed light on the conservation of the kelp Saccharina japonica. Evol Appl 12:791–803
Zhang Q, Tan S, Gong J (2016a). Protist communities in water and sediment of a Sea cucumber farming system. Protistology 10(2)
Zhang W, Yang H, Xia X, Xie L, Xie G (2016b) Triassic chrysophyte cyst fossils discovered in the Ordos Basin, China. Geology 44:1031–1034. https://doi.org/10.1130/G38527.1
Zhang X, Fan X, Wang Y, Xu D, Zhang J, Ye N (2021) Exploring core response mechanisms to multiple environmental stressors via a genome-wide study in the brown alga Saccharina japonica (Laminariales, Phaeophyceae). J Phycol 57:345–354
Zhang X, Kan J, Wang J, Gu H, Hu J, Zhao Y, Sun J (2015) First record of a large-scale bloom-causing species Nannochloropsis granulata (Monodopsidaceae, Eustigmatophyceae) in China Sea waters. Ecotoxicology 24:1430–1441
Zhang X, Watanabe MM (2001) Grazing and growth of the mixotrophic chrysomonad Poterioochromonas malhamensis (Chrysophyceae) feeding on algae. J Phycol 37:738–743
Zhao X, Hoguin A, Chaumier T, Tirichine L (2022) Epigenetic control of diatom genomes: an overview from in silico characterization to functional studies. In The Molecular Life of Diatoms. Falciatore A, Mock T (eds), pp 179–202. Cham, Springer International Publishing. https://doi.org/10.1007/978-3-030-92499-7_7
Zhukova NV, Aizdaicher NA (1995) Fatty acid composition of 15 species of marine microalgae. Phytochemistry 39:351–356
Zimmermann J, Abarca N, Kusber W-H, Skibbe O, Jahn R (2021) Kieselalgen – winzig aber wichtig. Biol Unserer Zeit 51:132–141
Zimorski V, Rauch C, van Hellemond JJ, Tielens AGM, Martin WF (2017) The mitochondrion of Euglena gracilis. In: Schwartzbach SD, Shigeoka S (eds), Euglena: Biochemistry, Cell and Molecular Biology, pp 19–37. Berlin, Springer, Cham
Zobel HF (1988) Molecules to granules: a comprehensive starch review. Starch/staerke 40(2):44–50
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Friedl, T. (2024). Algae from Secondary Endosymbiosis. In: Büdel, B., Friedl, T., Beyschlag, W. (eds) Biology of Algae, Lichens and Bryophytes. Springer Spektrum, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-65712-6_5
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