STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI88063.1Beta-barrel assembly machine subunit BamA. (666 aa)    
Predicted Functional Partners:
SHI88109.1
Family of unknown function.
 
   
 0.914
SHJ79024.1
Tetratricopeptide repeat-containing protein.
 
 
 0.901
SHK32828.1
Type II/III secretion system short domain-containing protein.
  
   
 0.739
SHJ15956.1
Type II secretion system protein D.
  
     0.737
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
    0.728
SHI88725.1
Biopolymer transport protein ExbB.
  
     0.721
SHJ25193.1
Biopolymer transport protein ExbB.
  
     0.694
SHK28564.1
Biopolymer transport protein ExbB.
  
     0.671
SHJ99300.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
 
     0.651
SHI48501.1
Regulator of sigma E protease.
  
  
 0.649
Your Current Organism:
Rubritalea squalenifaciens
NCBI taxonomy Id: 1123071
Other names: R. squalenifaciens DSM 18772, Rubritalea squalenifaciens DSM 18772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.