These bakery style gluten free chocolate chip muffins tick all the boxes: they’re easy to make, have a fluffy and moist crumb, and a beautifully caramelised, proudly domed muffin top. Plus, I’ve included some useful tips about how to keep your muffins moist and fluffy, and how to prevent the chocolate chips from sinking!
I’ve got a confession to make: for the longest time, my relationship with gluten free muffins was less of a love-hate and more of a hate-hate variety. For the life of me, I just couldn’t get that beautifully domed top paired with a moist crumb, almost no matter what I did.
And then, after many tears, a few meltdowns and numerous failed batches that filled the trash to the brim… I cracked the muffin code. (You might think I’m exaggerating and being melodramatic – I’m really not.) And since that turning point, churning out batch after batch of perfect muffins has become a piece of cake.
I’m a big fan of bakery-style muffins with that gorgeous caramelised mushroom-shaped top… and I also can’t get enough of chocolate, so I combined these two loves into one delicious (and really easy!) recipe: gluten free bakery style chocolate chip muffins. And aren’t they just mouth-watering?
Why are these gluten free muffins so great?
Now, I might be biased here, but these GLUTEN FREE (!) muffins truly tick every single box.
- They’re easy to make,
- they’re fluffy and moist (even the next day – and on days 3 and 4, they can be restored to their original fluffy glory by microwaving them for about 10 seconds),
- they have have the most amazing domed, caramelised muffin top,
- the light brown sugar and vanilla give them an extra depth of flavour, and
- there’s chocolate chips!!!
(And we all know that adding chocolate always takes things from delicious to out-of-this-world-amazing.)
Things to keep in mind when making muffins: why muffin batter should be thick
Here’s a checklist of Top 3 things to remember when making muffins:
- Thick batter consistency: muffin batter has to be fairly thick, much thicker than that for cupcakes. This helps with the formation of a gloriously domed, tall muffin (rather than a flat, only gently rounded cupcake). When you scoop muffin batter into cupcake liners, you’re looking for a batter consistency that doesn’t spread out (like cupcake batter might) but keeps the shape of the scoop.
- Filling muffin cases (paper liners) all the way to the brim: this is especially important if you want to achieve that beautiful bakery-style (jumbo muffin) top.
- Bake muffins at a higher temperature compared to cupcakes: whereas cupcakes are usually baked at 320 – 350 ºF (160 – 180 ºC), muffins require a higher baking temperature of about 375 ºF (190 ºC).
And the end result, if you follow this advice: a beautifully domed muffin, perfectly caramelised around the edges.
How do you make fluffy muffins, and prevent them from being dense?
A thick batter can have the “side effect” of dry, dense muffins – well, not with this recipe. The addition of milk and yogurt keeps the muffins nice and moist, while a generous amount of raising agents and a squeeze of lemon juice ensure that they’re tall and fluffy.
The amounts of baking powder and baking soda are optimised to give a soft, fluffy crumb without leaving behind any aftertaste, and the lemon juice (as well as the acidity from the yogurt) gives the raising agents an extra boost.
How do you make bakery style chocolate chip muffins?
Making gluten free bakery-style chocolate chip muffins truly couldn’t be easier. Here’s an overview (scroll down to the bottom of the page for the full recipe including ingredient quantities):
- Sift together the dry ingredients, including sugar.
- Add the softened butter and work it into the dry ingredients until you get a mixture resembling breadcrumbs.
- In a separate bowl, whisk together the wet ingredients, and add them to the flour-butter mixture. Mix everything together until you get a smooth, thick batter with no flour clumps.
- Mix in the chocolate chips.
- Spoon or scoop the muffin batter into the muffin liners, filling them to the brim (or even forming a small mound of batter rising above the muffin liners edge, in the case of jumbo muffins), and bake at 375 ºF (190 ºC) for about 20 minutes or until an inserted toothpick comes out clean.
- Impatiently wait for the muffins to cool sufficiently to tuck in.
- Run out of patience and burn your tongue on the hot melted chocolate chips (it’s still 100% worth it).
- Repeat step #7 until no muffins are left (or, you know, find some willpower and wait for them to cool).
How do you keep chocolate chips from sinking in muffins?
In short: you don’t have to do anything. No need to coat the chocolate chips in flour or anything like that. If your muffin batter is nice and thick (as it should be if you follow this recipe), then this should automatically and without any further effort from your side be enough to prevent the chips from sinking.
As a failsafe, you can scoop about 1 tablespoon of plain batter (before you mix in the chocolate chips) into the bottom of each muffin paper liner – this is completely optional and it skews the chocolate chip distribution slightly towards the top of the muffin.
And… that’s it, really. These gluten free chocolate chip muffins are pretty much everything you might want a muffin to be, with an extra dose of chocolate.
I really hope you’ll love them as much as I do.
As always: enjoy.
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Gluten Free Bakery Style Chocolate Chip Muffins
Ingredients
- 2 1/3 cups (280 g) gluten free flour blend (Note 1)
- 3/4 cup + 1 tbsp (80 g) almond flour (if you have an almond allergy, you can substitute it with an equal weight of gluten free flour blend, but the muffins will be slightly drier)
- 3/4 cup (150 g) light brown sugar
- 2 tsp baking powder
- 1 tsp baking soda
- 1 tsp xanthan gum (omit if your gluten free flour blend already contains xanthan gum or if using regular flour)
- 1/2 tsp salt
- 1 stick + 1 tbsp (130 g) softened unsalted butter
- 1/2 cup + 1 1/2 tbsp (140 mL) milk, can be cold or room temperature
- 1/2 cup + 1 1/2 tbsp (140 g) plain yogurt, can be cold or room temperature
- 2 US large/UK medium eggs, can be cold or room temperature
- 1/2 - 1 tsp vanilla bean paste (or 1 - 2 tsp vanilla extract)
- 2 tbsp lemon juice
- 5 1/3 oz (150 g) chocolate chips
Instructions
- Adjust the oven rack to the middle position, pre-heat the oven to 375 ºF (190 ºC) and line a 12-hole muffin tin with muffin cases (paper liners).
- In a large bowl, whisk together the gluten free flour blend, almond flour, light brown sugar, baking powder, baking soda, xanthan gum and salt.
- Add the butter and, using a hand mixer with the double beaters attachment or a stand mixer with the paddle attachment, work it into the dry ingredients until you get a mixture resembling breadcrumbs.
- In a separate bowl, whisk together the milk, yogurt, eggs, vanilla bean paste and lemon juice, and add them to the butter-flour mixture. Whisk them together until you get a thick, smooth batter with no flour clumps.
- Mix in the chocolate chips, reserving some for sprinkling on top, until evenly distributed.
- Scoop the batter into the muffin cases, dividing it equally between 12 (for standard muffins, cases filled to the brim) or 9 - 10 cases (for jumbo muffins, batter makes a small mound rising above the edge of the muffin cases). Sprinkle with the reserved chocolate chips.
- Bake at 375 ºF (190 ºC) for 18 - 20 minutes (standard muffins) or 20 - 22 minutes (jumbo muffins), or until risen, golden brown on top and an inserted toothpick comes out clean or with a few moist crumbs attached.
- Leave in the muffin tin for 3 - 4 minutes, then remove from the tin and place onto a wire cooling rack to cool completely.
- Storage: The gluten free chocolate chip muffins are best eaten on the day of baking, but they can be kept in an airtight container in a cool dry place for up to 4 days. On days 3 and 4, they're best if first microwaved for 5 - 10 seconds.
Notes
Looking for more delicious simple dessert recipes?
You’re in the right place!
I love to use this recipe to make muffin tops. I make the muffin base the same as usual and usually add sprinkles and white chocolate chips and then spread them on a sheet pan like you would a cookie.
These were the best gf muffins I’ve ever baked. I followed your recipe exactly and weighed all my ingredients. They came out super light and moist.
Thank You so much.
In a pinch I subbed in full-fat sour cream for the yogurt and they turned out beautifully. Definitely will make these again and again!
This is the best muffin recipe I’ve tried after many years of baking for my celiac husband. Not super sweet, fluffy and well raised. Perfect texture and flavour. I did half the ingredient because I’ve only got a 6 muffin mood and they still turned out perfect
Best ever! These fluff up, are not dense and delicious,,,
I’ve made these three times so far and they always turn out amazing… I want to try to bake it in a loaf pan – do you think it would work?
I’m so glad you loved them! I’ve never tried baking the batter in a loaf pan but I think it should work. Let me know how it turns out!
This is the only recipe in my bookmarks that needs no amendments or changes. It is perfect and I recommend it to everyone. Holy Moly!
Amazingly perfect, my whole family loves them!
These were delicious! I could barely tell they were GF! My brown sugar was old so I subbed white cane sugar.
I used bob’s red mill for the GF flour blend and almond flour.
These were delicious! I made 6 pretty large muffins and 12 mini muffins. I didn’t have any almond flour so I used sorghum instead and it worked great!
Can I use oat flour instead of almond flour?
I’ve never tired it but it should work OK. Alternatively, you can replace the almond flour with an equal weight of extra GF flour blend.
Amazing recipe, i used the Oat flour instead of Almond, raised to perfection, was very tasty, even my picky teenager gobbled them up.
These were incredible!
I was amazed to have a gluten free muffin that was cooked to perfect but still bounced back when squeezed. Not only was the crumb great, but the flavour was delicious. Thank you for sharing recipes that no one would ever guess are Gluten Free. This is definitely a keeper recipe, and I’m looking forward to switching the chocolate chips for berries and other add-ins.
Just made for first time and are perfect. Thank you!
So many gluten free recipes are disappointing but not these.
We love these. They are such a yummy treat in our house. I add a bit of physillium husk or ground flax to add some fibre. They remind me of Tim Horton’s chocolate chip muffins. Thanks!
I have baked these muffins quite a few times now and they are just perfect, my absolute favourite as they come out the same every time. I have tried with white choc chip and with blueberries, just as successful. I put a batch in the freezer to have on hand every day for tea break and warm them for 30 seconds, they taste like they were just baked. Thank you Kat for bringing some joy back into my life!!!
Regular or convection oven?
Please and Thank you
All oven temperatures are for a regular, non-fan oven.
This sounds like a great GF muffin recipe for my granddaughter. Can they be stored in the freezer?
I haven’t tried freezing them myself but other readers have and apparently they freeze well!
Great muffins fluffy and moist, good amount of chocolate and best eaten fresh. Also used ground almond instead of almond flour and worked perfectly.
So you happen to have the nutritional breakdown for 12 muffins? My daughter has celiac disease and type 1 diabetes so we always need to know how many carbs and fibre is in an item. I can’t wait to try your recipes! Thanks
Unfortunately not, really sorry! But if you plug the ingredients and quantities into an online calculator, it should give you a fairly good estimate… Sorry I can’t be of more help!
Rating
Comment
Great recipe! Here are a few notes:
• I used strawberry yogurt
• Using the recipe I had a little more than twelve muffins
• I do not suggest sprinkling the chocolate chips on top because although they looked nice, they just burnt in my oven. Did I do something wrong?
Again, thanks for delicious and gf muffins!
-A
Used Bob’s 1-1 flour and had to use sour cream instead of yogurt and almond extract instead of vanilla because of allergies. These were AMAZING! So soft and tender and just perfect
These were amazing. I like that you had the weight for the ingredients. I’ve never tried that before so it was fun giving it a go with this recipe and it went well. I used all gluten free flour instead of part almond and I’m really happy with it. Thanks so much!
These were absolutely fabulous!
Texture and look is great but i found these to be not sweet enough, which is strange for me as usually i tend to cut down on sugar in recipes. Will try again with 200 or 250g sugar.
Where have you been all my life!?! If I hadn’t made these myself I wouldn’t believe they were gluten free. These are the most delicious muffins I’ve ever had. Made them as the recipe wanted using grams for the measurements. Thank you for this recipe can’t wait to try it with blueberries!
O????M⭐️G
The insanely best GF muffins ever baked in the history of baking!!! My family ate 3each as soon as they came out of the oven! They generally are scared of my GF baking ???? this recipe is so good
I put dark chocolate chunks instead of chips which made it amazing too! Thank you loopywhisk! Incredible xxx Arian
Thanks so much for the wonderful GF recipe.
I didn’t have brown sugar at home so I used caster sugar and a bit of maple syrup instead. The muffins were just amazing. My 2 daughters who are new to gluten free food (newly diagnosed with Coeliac disease) are truly impressed with the taste and texture of the muffins. They even said it’s better than the ones I used to make before they went on gluten free ! Thanks again for sharing!
These were so good!!! I am a week into coeliac life and these didn’t taste gluten free. Thank you for the recipe.
To say these are amazing is an understatement. I’m going to check out more of your recipes right now. Thank you!
My husband is coeliac, so I’m always on the hunt for gf food that doesn’t have that awful gf taste 😉
A lot of gf recipes are also way too complicated with all the substitute flours.
This recipe was amazing, and I will definitely make these over and over!
I didn’t need the xanthum gum (phew! Almost went in the “too complicated” pile ????.
Just normal gluten free flour and almond meal which is always on hand in my pantry!
Thankyou – these taste fantastic and were nice and easy ????
These are the BEST gf muffins. Great texture, taste–a winner. Even my nonceliac teen will eat these, by choice.
Could I substitute blueberries for the chocolate chips??
You definitely can!
This was so good for my GF and DF son. I substituted the butter for Avacado oil and it was delicious. Great recipe for my picky pants 11 year old
I’m making the chelate chip muffins. I would like to substitute agave syrup instead of the 3/4 cups of light brown sugar. Could you suggest the amount of agave I could use?
Thank you so much.
Hi Nancy, unfortunately I don’t have any experience in baking with agave syrup, so really can’t help you there. Note that using a liquid sweetener instead of a crystalline sweetener will change the texture of the muffins!
Hi Kat,
Having to cook for a person with a GF + dairy free + nut free diet here due to health reasons, do you think I could do the following substitutions?
– Almond flour for the GF flour blend
– Butter for Flora margarine
– Cow’s milk for almond milk
– Dairy yogurt for dairy-free yogurt
Your GF recipes have been a life saver in this house. I’ve preordered your book – can’t wait to get my hands on it!
Annie
Hi Annie,
I’m so glad you’ve been enjoying my recipes and I really hope you’ll love the book!
In theory, all the substitutions should work, but as I haven’t tested them, I can’t say with 100% certainty how the muffins will turn out. It’s definitely a large number of changes to make at once – but if you do give them a try let me know how they turn out!
Just made these as mini-muffins, I got 36 out of this recipe. About 15 mins in the oven. They are so springy and light! I subbed the choc-chips for a sprinkle of cinnamon on top. I currently have your GF pizza dough rising on the kitchen counter for later as well… stay tuned! Thank you!
AWESOME!!!!YOU HAVE TO TRY!!!!!
Amazing!
These muffins have amazing texture. We substituted the chocolate chips with cocoa, and plain yogurt with cherry yogurt. They rose beautifully in the oven! taste great.
I just made these muffins, and I think they need vanilla extract. You mentioned vanilla above, but it isn’t listed in the ingredients list. Was there supposed to be vanilla in these muffins?
Hi Sarah, thank you for catching that – yes, there should’ve been 1/2 teaspoon vanilla bean paste in the recipe!
Can I use hazelnut flour instead of almond flour? And what is the ratio? Thanks.
You should be able to use hazelnut flour (use the same weight as for almond flour), but I can’t say with 100% certainty as I haven’t tested it.
I’ve never used hazelnut flour but the combination of chocolate and hazelnut sounds absolutely divine 🙂
Thanks so much for this amazing muffin recipe, I have been searching for A decent one for years and this is it!! My 2 celiac teens (and non celiac) are loving them.
I bake gf all the time and these are probably the best chocolate chip muffins I heave made. I had run out of almond flour so I used gf all purpose mix and they were still moist. Only thing I did different was bake at 400 for the first minutes then 375 for the rest of the time. Thank you for a wonderful recipe.
Can almond flour be subbed here?
I wouldn’t use 100% almond flour for this recipe, as it has very different properties from a GF flour blend, and it could alter the texture for the negative.
WOW! Tese are looking serious good! Soft and moist, it must be thanks to almond flour:)
I can’t have potatoes – any advice for a substitution for the potato flour?
You can use tapioca starch, arrowroot starch or cornstarch.
how many grams of each flour should be used in Note 1?
Hi Erica, you need:
280*0.5=140g of white rice flour
280*0.3=84g of potato starch
280*0.2=56g of maize flour