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Phylogenetic placement and reappraisal of Diorygma karnatakense including the new synonym, Diorygma dandeliense, from Maharashtra, India

Published online by Cambridge University Press:  04 May 2023

Parayelil A. Ansil
Affiliation:
Biodiversity & Palaeobiology (Fungi & Lichens) Group, MACS-Agharkar Research Institute, Pune, 411004, Maharashtra, India
Kunhiraman C. Rajeshkumar*
Affiliation:
Biodiversity & Palaeobiology (Fungi & Lichens) Group, MACS-Agharkar Research Institute, Pune, 411004, Maharashtra, India
Bharati Sharma
Affiliation:
Biodiversity & Palaeobiology (Fungi & Lichens) Group, MACS-Agharkar Research Institute, Pune, 411004, Maharashtra, India
Robert Lücking
Affiliation:
Botanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany
David L. Hawksworth
Affiliation:
Department of Life Sciences, Natural History Museum, London SW7 5BD, UK Royal Botanic Gardens, Kew, Richmond, Surrey TW9 1AB, UK
*
Author for correspondence: Kunhiraman C. Rajeshkumar. E-mail: rajeshfungi@gmail.com

Abstract

This study re-examined the status of species of Diorygma Eshw. known from the Western Ghats using an integrative taxonomy approach that includes morphological and chemical data, as well as multigene phylogenetic analyses. Prior to this work, the two species D. karnatakense and D. dandeliense were distinguished primarily on lirellae morphology (branching pattern) and the number of ascospores per ascus. Our study of the morphology, chemistry and molecular phylogeny (mtSSU, LSU and RPB2) of freshly collected samples and re-examination of type material suggests that both names should be synonymized. Consequently, D. karnatakense is accepted as the correct name, with D. dandeliense as a newly proposed synonym. Phylogenetically, D. karnatakense is allied to D. antillarum and D. hieroglyphicum.

Type
Standard Paper
Copyright
Copyright © The Author(s), 2023. Published by Cambridge University Press on behalf of the British Lichen Society

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References

Archer, AW (2006) The lichen family Graphidaceae in Australia. Bibliotheca Lichenologica 94, 1191.Google Scholar
Archer, AW (2007) Key and checklist for the lichen family Graphidaceae (lichenized Ascomycota) in the Solomon Islands. Systematics and Biodiversity 5, 922.CrossRefGoogle Scholar
Archer, AW and Elix, JA (2008) Three new species in the Australian Graphidaceae (lichenized Ascomycota). Australasian Lichenology 63, 2629.Google Scholar
Awasthi, DD and Joshi, M (1979) Lichen genera Helminthocarpon, Cyclographa, and Cyclographina (gen. nov.). Norwegian Journal of Botany 26, 165177.Google Scholar
Behera, PK and Nayaka, S (2020) Updated checklist of lichen biota of Meghalaya, India with 93 new distributional records for the state. Journal of Indian Botanical Society 100, 134147.CrossRefGoogle Scholar
Behera, PK, Nayaka, S, Upreti, DK and Chauhan, RS (2021) New distributional records to lichen biota of Assam, India. Indian Forester 147, 400404.CrossRefGoogle Scholar
Cáceres, MES (2007) Corticolous crustose and microfoliose lichens of northeastern Brazil. Libri Botanici 22, 1168.Google Scholar
Eschweiler, FG (1824) Genera Exhibens rite distincta, Pluribus Novis Adaucta. Systema Lichenum 25, 126.Google Scholar
Feuerstein, SC, Cunha-Dias, IPR, Aptroot, A, Eliasaro, S and Cáceres, MES (2014) Three new Diorygma (Graphidaceae) species from Brazil, with a revised world key. Lichenologist 46, 753761.CrossRefGoogle Scholar
Glez-Peña, D, Gómez-Blanco, D, Reboiro-Jato, M, Fdez-Riverola, F and Posada, D (2010) ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research 38, W14W18.CrossRefGoogle ScholarPubMed
Gupta, P, Randive, P, Nayaka, S, Daimari, R, Joseph, S and Janarthanam, MK (2020) New records of graphidoid and thelotremoid lichens from India. Mycotaxon 135, 345354.CrossRefGoogle Scholar
Hall, TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 9598.Google Scholar
Hawksworth, DL (1987) The evolution and adaptation of sexual reproductive structures in the Ascomycotina. In Rayner, ADM, Brasier, CM and Moore, D (eds), Evolutionary Biology of the Fungi. Cambridge: Cambridge University Press, pp. 179189.Google Scholar
Kalb, K, Staiger, B and Elix, JA (2004) A monograph of the lichen genus Diorygma – a first attempt. Symbolae Botanicae Upsalienses 34, 133181.Google Scholar
Katoh, K, Rozewicki, J and Yamada, KD (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20, 11601166.CrossRefGoogle ScholarPubMed
Kraichak, E, Lücking, R, Aptroot, A, Beck, A, Dornes, P, John, V, Lendemer, JC, Nelsen, MP, Neuwirth, G, Nutakki, A, et al. (2015) Hidden diversity in the morphologically variable script lichen (Graphis scripta) complex (Ascomycota, Ostropales, Graphidaceae). Organisms Diversity and Evolution 15, 447458.CrossRefGoogle Scholar
Makhija, U, Chitale, G and Sharma, B (2009) New species and new records of Diorygma (Graphidaceae) from India: species with convergent exciples. Mycotaxon 109, 379392.CrossRefGoogle Scholar
Mangold, A, Martín, MP, Lücking, R and Lumbsch, HT (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57, 476486.Google Scholar
Mohabe, S, Nayaka, S, Reddy, AM and Devi, BA (2015) Diorygma kurnoolensis (Graphidaceae), a new saxicolous lichen species from Andhra Pradesh, India. Geophytology 45, 4750.Google Scholar
Müller, J (1880) The taxonomy of the genus Graphis sensu Staiger (Ascomycota: Ostropales: Graphidaceae). Flora 63, 1724.Google Scholar
Nayaka, S, Mishra, GK and Upreti, DK (2019) Floristic diversity status assessment of lichens from Dima Hasao district, North East, India. International Journal of Plant and Environment 5, 8491.CrossRefGoogle Scholar
Orange, A, James, PW and White, FJ (2001) Microchemical Methods for the Identification of Lichens. London: British Lichen Society.Google Scholar
Rambaut, A (2014) FigTree version 1.4.2. Institute of Evolutionary Biology, University of Edinburgh. [WWW resource] URL http://tree.bio.ed.ac.uk/software/figtree [Accessed 6 November 2019].Google Scholar
Rashmi, S and Rajkumar, HG (2015) First report of foliicolous lichen biota in South Karnataka, India. International Journal of Current Microbiology and Applied Sciences 4, 250256.Google Scholar
Rivas, Plata E, Parnmen, S, Staiger, B, Mangold, A, Frisch, A, Weerakoon, G, Hernández, JE, Cáceres, MES, Kalb, K, Sipman, HJM, et al. (2013) A molecular phylogeny of Graphidaceae (Ascomycota, Lecanoromycetes, Ostropales) including 428 species. MycoKeys 6, 5594.Google Scholar
Ronquist, F, Teslenko, M, van der Mark, P, Ayres, DL, Darling, A, Höhna, S, Larget, B, Liu, L, Suchard, MA and Huelsenbeck, JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539542.CrossRefGoogle ScholarPubMed
Sharma, B and Khadilkar, P (2012) Four new species of Diorygma from India. Mycotaxon 119, 110.CrossRefGoogle Scholar
Sharma, B and Makhija, U (2009 a) Four new species in the lichen genus Diorygma. Mycotaxon 107, 8794.CrossRefGoogle Scholar
Sharma, B and Makhija, U (2009 b) New species and new reports of Diorygma (lichenized Ascomycotina, Graphidaceae) from India. Mycotaxon 109, 209217.CrossRefGoogle Scholar
Singh, P and Singh, KP (2015) Additional lichen records of Graphidaceae for Manipur, Meghalaya and Nagaland, North-East India. Geophytology 45, 181194.Google Scholar
Singh, P and Singh, KP (2017) New combinations in the family Graphidaceae (lichenized Ascomycota: Ostropales) from India. Lichenologist 49, 527533.CrossRefGoogle Scholar
Singh, P and Singh, KP (2020) New combinations and synonyms in Graphidaceae (lichenized Ascomycota) from India. Lichenologist 52, 251256.CrossRefGoogle Scholar
Singh, P, Singh, KP and Bhatt, AB (2015) Diversity and distribution of microlichens in the state of Arunachal Pradesh, Eastern Himalaya, India. Check List 11, 1807.CrossRefGoogle Scholar
Sinha, GP, Nayaka, S and Joseph, S (2018) Additions to the checklist of Indian lichens after 2010. Cryptogam Biodiversity and Assessment, Special Volume 2018, 197206.Google Scholar
Staiger, B (2002) Die Flechtenfamilie Graphidaceae: studien in Richtung einer natürlicheren Gliederung. Bibliotheca Lichenologica 85, 1526.Google Scholar
Stamatakis, A (2006) RAxML-VI-HPC: maximum likelihood based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 26882690.CrossRefGoogle ScholarPubMed
Stamatakis, A, Hoover, P and Rougemont, J (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57, 758771.CrossRefGoogle ScholarPubMed
Swarnalatha, G (2021) A new species of Diorygma (Graphidaceae) from India. Botanical Survey of India Archive for Lichenology 26, 14.Google Scholar
Tripp, EA, Lendemer, JC and Harris, RC (2010) Resolving the genus Graphina Müll. Arg. in North America: new species, new combinations, and treatments for Acanthothecis, Carbacanthograhis, and Diorygma. Lichenologist 42, 5571.CrossRefGoogle Scholar
Turland, NJ, Wiersema, JH, Barrie, FR, Greuter, W, Hawksworth, DL, Herendeen, PS, Knapp, S, Kusber, WH, Li, DZ, Marhold, K, et al. (2018) International Code of Nomenclature for Algae, Fungi, and Plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile No. 159. Glashütten: Koeltz Botanical Books.Google Scholar
Vilgalys, R and Hester, M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 42384246.CrossRefGoogle ScholarPubMed
Zoller, S, Scheidegger, C and Sperisen, C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31, 511516.CrossRefGoogle Scholar