m y c o l o g i c a l r e s e a r c h 1 1 0 ( 2 0 0 6 ) 346 – 356
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Metschnikowia noctiluminum sp. nov., Metschnikowia
corniflorae sp. nov., and Candida chrysomelidarum sp. nov.,
isolated from green lacewings and beetles
Nhu H. NGUYEN, Sung-Oui SUH, Cennet K. ERBIL, Meredith BLACKWELL*
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
article info
abstract
Article history:
Fourteen yeast isolates belonging to the Metschnikowia clade were isolated from the diges-
Received 6 May 2005
tive tracts of lacewings (Neuroptera: Chrysopidae), soldier beetles and leaf beetles (Coleoptera:
Received in revised form
Cantharidae and Chrysomelidae), and a caddisfly (Trichoptera: Hydropsychidae). The insect
21 September 2005
hosts were associated with sugary substances of plants, a typical habitat for yeasts in
Accepted 3 November 2005
this clade. Based on DNA sequence comparisons and phenetic characters, the yeasts
Published online 14 February 2006
were identified as Candida picachoensis, Candida pimensis, and four undescribed taxa. Among
Corresponding Editor: Teun Boekhout
the undescribed taxa, three yeasts were distinguished from one another and from other described taxa by nucleotide differences in the ribosomal DNA repeat, which were sufficient
Keywords:
to consider them as new species. Two of the novel yeast species are described as Metschni-
Coleoptera
kowia noctiluminum (NRRL Y-27753T) and M. corniflorae spp. nov. (NRRL Y-27750T) based in
Insect-fungus interactions
part on production of needle-shaped ascospores, which are found in most Metschnikowia
Molecular phylogeny
species. Sexual reproduction was not observed in the third new yeast, Candida chrysomeli-
Neuroptera
darum sp. nov. (NRRL Y-27749T). A fourth isolate, NRRL Y-27752, was not significantly dis-
Yeasts
tinct from Metschnikowia viticola and Candida kofuensis to be described as a new species.
Phylogenetic analysis of the D1/D2 loop sequences placed M. noctiluminum within the M. viticola clade, while C. chrysomelidarum was a sister taxon of Candida rancensis. Metschnikowia
corniflorae was phylogenetically distinct from other new species and fell outside of the
large-spored Metschnikowia group.
ª 2006 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
Introduction
Yeasts in the genus Metschnikowia and a few related Candida
species are often found associated with a variety of substrates
including plants, insects, aquatic arthropods and sea water
(Miller & Phaff 1998; Barnett et al. 2000). Those directly associated with insect and flower communities, predominantly beetles, have been well documented by various researchers
(Gimenez-Jurado et al. 2003; Hong et al. 2003; Lachance &
Bowles 2002, 2004; Lachance et al. 1998a, 1998b, 2001a, 2001b,
2003, 2005). However these yeasts were isolated from the
surface of the host insects. The digestive tract environment
of insects is a largely unexplored habitat for many microorganisms, including yeasts and yeast-like fungi. An incredible
array of previously unknown yeasts occurring in clusters
throughout the yeast phylogenetic tree has been discovered
in the gut of beetles and other insects (e.g. Suh & Blackwell
2004, 2005; Suh et al. 2003, 2004a, 2004b, 2005a, 2005b;
Zhang et al. 2003). More recently, yeasts belonging to the
Metschnikowia clade such as Metschnikowia chrysoperlae, Candida picachoensis, and Candida pimensis were isolated from the
gut and egg surface of several Chrysoperla (green lacewing)
* Corresponding author.
E-mail address: mblackwell@lsu.edu
0953-7562/$ – see front matter ª 2006 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
doi:10.1016/j.mycres.2005.11.010
New yeast species from insects
species (Neuroptera: Chrysopidae) collected in Arizona (Suh et al.
2004a), and Metschnikowia pulcherrima isolated from Chrysoperla rufilabris collected in Mississippi (Woolfolk & Inglis
2003). The basis of many interactions between yeasts and
their insect hosts is not clear. However, many animals rely
on microbial enzymes for the breakdown of plant cell wall
polymers, and a variety of organisms have been implicated
in these degradation processes. Regarding the use of enzymes
to act on plant carbohydrates, some animals have been shown
to rely on microbes to perform other functions such as fermentation to improve nutritional content of the food resources, detoxification of plant metabolites, and perhaps,
even pheromone production (Martin 1987; Dowd 1989, 1991;
Vega & Dowd 2005).
To determine whether additional associations between gut
fungi and insects exist, we sampled a broad range of insects to
determine the presence or absence of yeasts in their digestive
tracts. Among the yeasts isolated were several unknown species belonging within the Metschnikowia clade that were close
relatives of yeasts reported to be associated with insects. Here
we describe three new yeast species and discuss their host
relations.
Materials and methods
Yeast isolation
The methods for isolating yeasts from insects were described
in detail previously (Suh & Blackwell 2004; Suh et al. 2004b).
Adult insects were collected from several locations in Louisiana (USA) and Barro Colorado Island (Panama; Table 1). Insects were separated individually into clean containers with
dampened filter paper for 3 d and submerged in 95 % ethanol
for 2–3 min to disinfect the surface; disinfection was followed
by a wash with 0.7 % saline. The aseptically removed gut contents and the saline wash solution was plated separately on
acidified YM agar (Difco YM broth, 2 % plain agar, adjusted
to pH 3.5 with hydrochloric acid) and incubated at 25 C for
3–4 d. Single yeast colonies were purified at least twice and
maintained on 2 % malt extract agar (Yarrow 1998). Type
strains of new species were deposited in the Agricultural Research Service Culture Collection (NRRL) and duplicates at
Centraalbureau voor Schimmelcultures (CBS; Table 1). Morphological and physiological observations were performed
according to established methods (Yarrow 1998; Barnett et al.
2000). Ascospore formation was determined for all isolates
by first singly plating then crossing isolates with similar or
identical D1/D2 sequences in all combinations on dilute
(1:19) V8 agar at 17 C (Barnett et al. 2000) and observed periodically up to two months.
Phylogenetic analysis
Nucleic acids were extracted and purified using the procedures of previous reports (Suh & Blackwell 2004; Suh et al.
2004b). The primer sets NS1–NS8, LS1–LR5, and ITS5–ITS4
were used for PCR amplification of the rDNA repeats. Purified
double-stranded PCR products served as templates for
sequencing with an ABI PRISMÔ BigDye Terminator Cycle
347
sequencing kit version, 3.1 (Applied Biosystems, Foster City,
CA, USA). The complete sequence of the SSU rDNA, D1/D2 region of LSU rDNA, and the ITS and 5.8 S rDNA were obtained
with the primers NS1, NS2, 18H, NS5, NS8, LS1, LR3, ITS1,
and ITS4 using an ABI PRISM 377 automated DNA sequencer.
GenBank accession numbers for SSU and LSU rRNA gene
(rDNA) sequences from this study are listed in Table 1. DNA
sequences were aligned with the multialignment program
Clustal X (Thompson et al. 1997), and alignments were optimized visually; the beginnings and ends of sequences were
excluded from the analyses. The sequences from newly isolated yeasts were compared with sequences acquired from
GenBank. Saccharomyces cerevisiae was designated as the outgroup taxon. Maximum parsimony analyses were performed
using PAUP 4.0b10 (Swofford 2002). Heuristic tree searches
were executed using the tree bisection–reconnection
branch-swapping algorithm with random sequence analysis.
Bootstrap values of the most parsimonious tree were
obtained from 1000 replications. Bayesian MCMC (B-MCMC)
analysis was performed with MrBayes version 3.0b4 (Huelsenbeck 2000) to estimate the probability of nodes. The analysis consisted of 500 000 generations of four chains sampling
every 10 generations, and the first 50 000 generations were
discarded as burn in. The remaining trees were imported
into PAUP to estimate the posterior probability. Base-pair
differences in a gene were counted using BLAST 2 searches
(Tatusova & Madden 1999) or from a manually aligned sequence database.
PCR fingerprinting
The methods and conditions of DNA extraction, PCR, and electrophoresis for microsatellite-primed PCR (MSP-PCR) were
performed according to the methods of Sampaio et al. (2001).
Two primers, (GTG)5 and (GAG)5, were used for the analysis.
RAPD methods and analysis were performed according to
the methods of Su et al. (2001) with the primers OPA2, OPA8,
OPA14 and OPA16. Gel patterns were read manually, put into
PAUP 4.0b10 as binary codes, and analysed using UPGMA
algorithm.
Results
Yeast isolates and new species
Fourteen yeast cultures were isolated from the digestive
tracts of lacewings, soldier beetles, leaf beetles, and a caddisfly (Table 1). The results from BLAST searches of LSU
rDNA D1/D2 loop sequences showed that all of the new
yeasts were similar to species of Metschnikowia and their
anamorphs. Isolates with identical sequences were grouped
by genotype: (1) IY 03-8-14-1-3-1 and three other isolates
from the gut of C. rufilabris; (2) NRRL Y-27751 and NRRL Y27817, also from C. rufilabris; (3) NRRL Y-27829 isolated
from an unidentified lacewing; (4) NRRL Y-27753 and IY 038-14-2-2-2 from the gut of Ceraeochrysa lineaticornis; (5)
NRRL Y-27750 and NRRL Y-27816 isolated from the gut of
a flower-feeding cantharid beetle, Rhaxonycha sp.; (6) NRRL
Y-27749 and BG 02-7-16-002A-2-1 from chrysomelid beetles;
348
Table 1 – Metschnikowia and Candida yeasts species isolated from this study
Species
Strain designation
CBS
NRRL
Metschnikowia noctiluminum
9907
Y-27753T
Genotype
LSU
GenBank no.
SSU rDNA
LSU rDNA
Base pair difference
in D1/D2 loopa
Source
IY 03-8-14-2-2-1
4
AY611606
AY 611609
T
IY 03-8-14-2-2-2
4
-
-
0
BG 03-5-4-1-1
5
AY611607
AY611610
T
BG 03-5-4-1-2
5
-
-
0
BG 02-7-16-002A-1-1
6
AY520164
AY520294
T
BG 02-7-16-002A-2-1
6
-
-
0
Isolate NRRL Y-27752
9906
Y-27752
IY 03-6-7-2-3-2
7
AY611608
AY611611
T
Gut of Hydropsyche sp. (Trichoptera: Hydropsychidae), caught at
lights, USA: Louisiana: Walker.
Candida picachoensis
-
IY 03-8-14-1-3-1
1
-
-
0
Gut of Chrysoperla rufilabris (Neuroptera: Chrysopidae), caught at
light, USA: Louisiana: Walker.
Gut of C. rufilabris, caught at light, USA: Louisiana: Walker.
Gut of C. rufilabris, caught sweeping vegetation, USA: Louisiana:
Baton Rouge.
Gut of C. rufilabris, caught sweeping vegetation, USA: Louisiana:
Baton Rouge.
Gut of C. rufilabris, caught sweeping vegetation, USA: Louisiana:
Walker.
Gut of C. rufilabris, caught sweeping vegetation, USA: Louisiana:
Baton Rouge.
-
-
Metschnikowia corniflorae
9905
Y-27750T
-
Y-27816
Candida chrysomelidarum
9904
Y-27749T
-
-
-
-
IY 03-8-14-1-3-2
IY 04-1-3-1-1-1
1
1
-
-
0
0
-
-
IY 04-1-3-1-4-1
1
-
-
0
-
Y-27751
IY 03-5-25-3-1-1
2
-
AY611612
2
10068
Y-27817
IY 04-1-3-1-2-1
2
-
AY611613
2
Candida pimensis
10069
Y-27829
IY 03-5-10-4-1-2
3
-
-
0
Gut of Ceraeochrysa lineaticornis (Neuroptera: Chrysopidae),
caught at lights, USA: Walker, Louisiana.
Gut of C. lineaticornis, caught at lights, USA: Louisiana: Walker.
Gut of Rhaxonycha sp. (Coleoptera: Cantharidae), ex flowers of Cornus
drummondii, Baton Rouge, Louisiana, USA.
Gut of Rhaxonycha sp., ex flowers of C. drummondii, USA: Louisiana:
Baton Rouge.
Gut of unidentified chrysomelid (Coleoptera: Chrysomelidae),
Panama: Barro Colorado Island.
Gut of unidentified chrysomelid, Panama: Barro Colorado Island.
a The D1/D2 loop sequences were compared with those of the type strains of each species. The differences included gaps, insertions, and substitutions. The D1/D2 sequences of C. picachoensis and C.
pimensis from this study were compared with those of the type strains of the species, NRRL Y-27607T and NRRL Y-27619T, respectively. ITS and 5.8SrDNA sequences for isolates within the Metschnikowia
viticola clade are DQ002494 for isolate NRRL Y-27752, DQ002495 for M. noctiluminum (Y-27753T), DQ002492 for Metschnikowia viticola (CBS 9950T), and DQ002493 for Candida kofuensis (NRRL Y-27226T). CBS,
Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; NRRL, Agricultural Research Service Culture Collection, National Center for Agricultural Utilization Research, Peoria, IL, USA; LSU,
Mycology Laboratory, Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA; T, type strain.
N. H. Nguyen et al.
Gut of unidentified chrysopid, caught sweeping vegetation, USA:
Louisiana: Baton Rouge.
New yeast species from insects
and (7) NRRL Y-27752 from a caddisfly of the genus Hydropsyche. Sometimes phenotypic differences among colonies
isolated from the gut of a single host were observed. In
such cases several colonies were purified in order to obtain
all potential genetic diversity, and although these colonies
usually were identical in all characters, NRRL Y-27753 (IY
03-8-14-2-2-1) and IY 03-8-14-2-2-2 differed in the rate of ascospore formation.
Yeasts with genotypes 1 and 2 were identified as C. picachoensis and yeast with genotype 3 as C. pimensis based on
the identical (or almost identical) D1/D2 loop sequences
with the type of the respective species. Genotype 2 isolates
differed from the type strain of C. picachoensis by only two
nucleotide substitutions. On diluted V8 agar, the two isolates
of genotype 2 produced pedunculate asci (Fig 1), which are
characteristic of the genus Metschnikowia (Miller & Phaff
1998). However, no ascopores were observed within these
structures after periodic observation from 3 d up to six
months. The result was the same after repeated observations on 2 % malt agar. Based on the great similarity of D1/
D2 sequences, the two isolates were considered to be conspecific with C. picachoensis, although there were variations
between these isolates and the type strain for assimilation
of D-glucosamine both as a carbon and a nitrogen source
(data not shown). The results from MSP-PCR also supported
placement of genotype 2 isolates as C. picachoensis (Fig 2).
Identical band patterns were observed for the type strain of
C. picachoensis, a strain with identical D1/D2 sequence, and
the two isolates of genotype 2 (lanes 1–4 in Fig 2); the patterns of the C. pimensis type and genotype 3 were clearly distinguished from those of C. picachoensis (lanes 5–6 in Fig 2).
However, identical D1/D2 loop sequences and other taxonomic characters were used as criteria to place this isolate
in the same species (Suh et al. 2004a).
Yeasts with genotypes 4–6 were clearly distinguished from
one another by sequence variation and were considered as
new species. Comparisons of the D1/D2 sequences of yeasts
with genotype 5 did not show a high degree of similarity
with any members of Metschnikowia clade. The result of
a BLAST search indicated that the closest sequence to this
Fig 1 – Sterile ascus of Candida picachoensis NRRL Y-27751 on
diluted V8 juice agar (1:19) at 17 C after five weeks.
Bar [ 5 mm.
349
Fig 2 – Microsatellite-primed PCR (MSP-PCR) patterns of insect associated yeasts obtained with primers (GAG)5 (lanes
1–10) and (GTG)5 (lanes 11–14). Lanes 1–4, C. picachoensis (1,
NRRL Y-27607T; 2, NRRL Y-27608; 3, NRRL Y-27751; 4, NRRL
Y-27817); lanes 5–6, C. pimensis (5, NRRL Y-27619T; 6, NRRL
Y-27829); lanes 7 and 11, M. noctiluminum NRRL Y-27753T;
lanes 8 and 12, isolate NRRL Y-27752; lanes 9 and 13, C.
kofuensis NRRL Y-27226T; lanes 10 and 14, M. viticola CBS
9950T. M, Molecular weight marker; C, Negative control.
genotype was that of Metschnikowia krissii, but with low similarity. Yeasts with genotype 6 differed from Candida rancensis
by more than 40 bp in the D1/D2 loop. Yeasts with genotype
4 were distinguished from those of the nearest genotypes
(genotype 7, Candida kofuensis, and Metschnikowia viticola) by
6–8 and 22–25 nucleotide differences in the D1/D2 loop and
ITS regions, respectively. MSP-PCR and RAPD patterns easily
distinguished yeasts of genotype 4 from those of other genotypes (Figs 2–3). Therefore, we consider the variation of these
isolates and those of genotypes 5 and 6 sufficient to be recognized as an independent species.
The genotype 7 isolate, NRRL Y-27752, differed from M. viticola by 4 bp (three gaps and one substitution), from C. kofuensis by 6 bp, and from genotype 4 isolates by 6 bp in the D1/D2
loop. The ITS region was 4 bp different from M. viticola, 13 bp
from C. kofuensis, and 24 bp from genotype 4 isolates. Péter
et al. (2005) considered M. viticola to be a possible teleomorph
of C. kofuensis based on their similar D1/D2 sequences (2 bp
difference). In addition to small differences in D1/D2 loop sequences among members of this group, there are other differences such as the assimilation results for D-ribose and
succinate (Table 2). Conjugation, clamydospore, or ascospore
formation was not observed in cultures of the genotype 4 isolate or in crosses with C. kofuensis.
It is often difficult to establish species limits among similar
strains. The task is even more difficult when strains apparently reproduce only asexually and geographical distributions
are poorly known. The closely related clade members may
merely be different strains of a highly variable species. Additional isolates will be necessary to resolve this question, and
we refer to this yeast as ‘‘isolate NRRL Y-27752’’.
Therefore, here we describe the three yeasts with unique
genotypes as new species in the genera Metschnikowia (isolates with genotypes 4 and 5) and Candida (isolates with genotypes 6).
350
N. H. Nguyen et al.
Fig 3 – Random amplified polymorphic DNA (RAPD) patterns from primers OPA2 (lanes 1–6), OPA8 (lanes 7–12), OPA14
(lanes 13–18) and OPA16 (lanes19–24). Lanes 1, 7, 13, and 19, M. noctiluminum Y-27753T; lanes 2, 8, 14, and 20, M. noctiluminum IY 03-8-14-2-2-2. Lanes 3, 9, 15, and 21, isolate NRRL Y-27752; lanes 4, 10, 16, and 22, C. kofuensis Y-27226T;
lanes 5, 11, 17, and 23, M. viticola CBS 9950T; lanes 6, 12, 18, and 24, M. viticola CBS 9949. M, Molecular weight marker;
C, Negative control.
Taxonomy
Metschnikowia noctiluminum N.H. Nguyen, S.O. Suh, Erbil &
M. Blackw. sp. nov. (Fig 4A–C)
Etym.: The species epithet, noctiluminum (noc.ti’lu.mi.num)
L. gen. plu. neu. n., ‘‘of the night lights,’’ refers to the attraction
of the insect hosts towards the shimmering night lights of
North Corbin Elementary School, Walker, LA, USA, the collection locality of the type strain.
In medio liquido dextrosum et peptonum et extractum levidenis
continente post 7 dies ad 25 C cellulae vegetative subglobosae aut
ellipsoideae (5–8 6–9 mm), singulae vel binae; pseudohyphae non
fiunt. Cultura in agaro extramalti et faecis continente post 7 dies
ad 25 C, cremea et butyrosa. In agaro farina Zeae maydis confecto
post 7 dies ad 25 C, pseudohyphae et hyphae verae non fiunt.
Ascosporae fiunt in agaro V8 cremor post 14 dies ad 17 C. Glucosum fermentatur. Galactosum, maltosum, a-methyl-D-glucosidum, sucrosum, trehalosum, melibiosum, lactosum, cellobiosum,
melezitosum, raffinosum, inulinum, amylum solubile et
D-xylosum non fermentantur. Glucosum, galactosum (infirme),
L-sorbosum, D-glucosaminum (infirme), sucrosum (lente), maltosum (lente), trehalosum (lente), a-methyl-D-glucosidum (infirme),
cellobiosum, salicinum, arbutinum, melezitosum, glycerolum,
ribitolum (infirme), xylitolum (infirme), D-glucitolum, D-mannitolum, gluconolactonum, 2-keto-D-gluconatum, D-gluconatum, DLacidum lacticum (infirme), acidum succinicum et acidum citricum
(infirme) assimilantur. D-ribosum, D-xylosum, L-arabinosum,
D-arabinosum, L-rhamnosum, melibiosum, lactosum, raffinosum, inulinum, amylum solubile, erythritolum, L-arabinitolum,
galactitolum, inositolum, D-glucuronatum, methanolum, ethanolum, propane-1, 2-diolum, butano-2, 3-diolum, acidum quinicum
et D-glucaratum non assimilantur. Ethylaminum, L-lysinum
cadaverinum et glucosaminum (infirme) assimilantur. Kalium
nitratum, natrium nitritum, creatinum, creatininum, imidazolum
et D-tryptophanum non assimilantur. Amylum non formatur.
Biotinum externum ad crescentiam necessarium est. Augmentum
in temperatura 35 C non fiunt. Non crescit in medio 10 mg mll
cycloheximido addito.
Typus: USA: Louisiana: Walker, isolata a ile neuropterorum
adultus (Chrysopidae: Ceraeochrysa lineaticornis), 2003, e.g. N.H.
Nguyen et al. (NRRL Y-27753 – holotypus; CBS 9907 –
isotypus).
After 7 d growth in YM broth at 25 C cells are subglobose
to ellipsoidal (5–8 6–9 mm), and occur singly, in pairs, or in
chains (Fig 4A). Pseudohyphae are not present. After 7 d on
YM agar at 25 C, colonies are cream and butyrous with an undulate margin. After 7 d on Dalmau plate culture on corn meal
agar at 25 C, pseudohyphae or true hyphae are not present.
Aerobic growth is off-white in color with an undulate margin.
Asci arise from chlamydospores on dilute V8 juice agar after
14 d at 17 C. Asci are sphaeropedunculate, usually 20–40 mm
in length, and containing mostly one, but sometimes two needle-shaped ascospores, after three weeks on diluted V8 agar
(Fig 4B and C). Ascospores are usually stable within the ascus
and are released in the presence of Cladosporium gossypiicola
(unpublished observation, Fig 4C). See Table 2 for a summary
of physiological characteristics.
Metschnikowia corniflorae N.H. Nguyen, S.O. Suh, Erbil &
M. Blackwell, sp. nov. (Fig 4D and E)
Etym.: The species epithet, corniflorae (cor.ni’flor.ae) L. gen.
sing. fem. n., ‘‘of Cornus flowers,’’ refers to Cornus drummondii
flowers on which the host beetle was collected.
In medio liquido dextrosum et peptonum et extractum levidinis
continente post 7 dies ad 25 C cellulae vegetative subglobosae aut
ovoidae (3–6 3–6 mm), singulae vel binae; pseudohyphae non
fiunt. Cultura in agaro extramalti et faecis continente post 7
dies ad 25 C, albida et butyrosa. In agaro farina Zeae maydis confecto post 7 dies ad 25 C, pseudohyphae et hyphae verae non fiunt.
Ascosporae fiunt in agaro V8 cremor post 7 dies ad 17 C. Glucosum
fermentatur. Galactosum, maltosum, a-methyl-D-glucosidum,
sucrosum, trehalosum, melibiosum, lactosum, cellobiosum,
melezitosum, raffinosum, inulinum, amylum solubile et D-xylosum non fermentantur. Glucosum, galactosum, L-sorbosum,
New yeast species from insects
351
Table 2 – Physiological characters of the new yeast species and related taxa in this study
Metschnikowia
corniflorae
Candida
chrysomelidarum
Metschnikowia
noctiluminum
Isolate NRRL
Y-27752
Metschnikowia
viticola
Candida
kofuensis
Assimilation of carbon sources
D-galactose
D-glucosamine
D-ribose
D-xylose
L-arabinose
D-arabinose
Sucrose
Maltose
Trehalose
a-Methyl-D-glucoside
Lactose
Raffinose
Glycerol
Ribitol
Xylitol
L-arabinitol
D-glucitol
D-gluconate
DL-lactate
Succinate
Citrate
Ethanol
1,2-Propanediol
Quinic acid
þ
þ
þ
d
w
w
þ
þ
þ
þ
þ
þ
þ
þ
þ
w
þ
þ
w
þ
þ
w
w
þ
d
þ
þ
þ
d
þ
þ
d
þ
þ
d
þ
-
w
w
d
d
d
w
þ
w
w
þ
þ
w
þ
w
-
d
w
þ
d
þ
d
d
d
þ
d
þ
þ
þ
w
d
-
þ
þ/w
d
þ
þ
þ
þ/w
þ
þ
þ
þ
þ/s
þ
þ
þ
-*
þ
þ
-*
d*
þ
þ
þ
þ
þ
þ
þ*
-*
þ
þ
þ
þ
-*
-*
-*
Assimilation of nitrogen sources
Nitrite
Creatine
Creatinine
D-glucosamine
Imidazole
D-tryptophan
w
-
w
-
w
-
w
-
na
na
na
na
na
na
na
Vitamin requirements
w/o Thiamin
w/o Pyridoxine and thiamine
þ
þ
þ
þ
þ
þ
w
w
na
na
na
na
w
þ
-
þ
þ
þ
w
-
þ
þ
þ
w
-
d
þ
þ
-
þ
þ
þ
þ
þ/w
þ
þ*
-*
w
-*
Growth
At 30 C
On 50 % D-glucose
On 60 % D-glucose
On 10 % sodium chloride
On 16 % sodium chloride
The following characteristics were invariable in all species compared. Fermentation of D-glucose (þ), D-galactose (-), maltose (-), a-methyl-Dglucoside (-), sucrose (-), a,a-trehalose (-), melibiose (-), lactose (-), cellobiose (-), melezitose (þ), raffinose (-), inulin (-), starch (-), D-xylose (-);
assimilation of D-glucose (þ), L-sorbose (þ), L-rhamnose (-), cellobiose (þ), salicin (þ), arbutin (þ), melibiose (-), melezitose (þ), inulin (-), soluble
starch (-), erythritol (-), D-mannitol (þ), galactitol (-), myo-inositol (-), D-glucono-1,5-lactone (þ*), 2-keto-D-gluconate (þ*), D-glucuronate (-*),
methanol (-), butane 2,3 diol (-), D-glucarate (-), nitrate (-), ethylamine (þ), L-lysine (þ), cadaverine (þ); growth on media without (w/o) all vitamins (-), w/o myo-Inositol (þ), w/o pantothenate (þ), w/o biotin (-), w/o biotin and thiamin (-), w/o pyridoxine (þ), w/o niacin (þ), w/o p-aminobenzoic acid (þ); growth on 0.01 % cycloheximide (-), 0.1 % cycloheximide (-), growth at 35 C (-), 1 % acetic acid (-); starch formation (-); urea
hydrolysis (-); diazonium blue B reaction (-). Abbreviations: þ, positive reaction; -, negative reaction; d, delayed positive reaction; w, weak positive reaction; na, not available. Data for C. kofuensis and M. viticola were from Mikata et al. (1999) and Péter et al. (2005) except for the results
marked with an asterisk (*) obtained from this study. The assimilation results of D-ribose, D-xylose and ethanol for C. kofuensis differed from
the original description (Mikata et al. 1999).
D-glucosaminum, D-ribosum, D-xylosum (lente), L-arabinosum
(infirme), D-arabinosum (infirme), sucrosum, maltosum, trehalosum, a-methyl-D-glucosidum, cellobiosum, salicinum, arbutinum,
lactosum, raffinosum, melezitosum, glycerolum, ribitolum, xylitolum, L-arabinitolum (infirme), D-glucitolum, D-mannitolum, gluconolactonum, 2-keto-D-gluconatum, D-gluconatum, DL-acidum
lacticum (infirme), acidum succinicum, acidum citricum, ethanolum (infirme), propane-1, 2-diolum (infirme) et acidum quinicum
assimilantur. L-rhamnosum, melibiosum, inulinum, amylum solubile, erythritolum, galactitolum, inositolum, D-glucuronatum,
methanolum, butano-2, 3-diolum, D-glucaratum et D-galactonatum non assimilantur. Ethylaminum, L-lysinum, cadaverinum et
352
N. H. Nguyen et al.
Figs 4 – New yeasts isolated from insects in this study. A–C. M. noctiluminum. A Budding yeast cells of NRRL Y-27753T on
YM agar at 25 C after 7 d. B Asci and ascospores of NRRL Y-27753T on diluted V8 juice agar at 17 C after two weeks. C
Asci and ascospore release of IY 03-8-14-2-2-2 on diluted V8 juice agar at 17 C after three weeks. Release of ascospores
was induced by culturing yeast cells with Cladosporium gossypiicola, CBS 117483 (data unpublished). D–E M. corniflorae
NRRL Y-27750T. D Budding yeast cells on YM agar at 25 C after 7 d. E Ascospores on diluted V8 juice agar at 17 C after
two weeks. F Budding yeast cells of C. chrysomelidarum NRRL Y-27749T on YM agar at 25 C after 7 d. All bars [ 5 mm.
glucosaminum (infirme) assimilantur. Kalium nitratum, natrium
nitritum, creatinum, creatininum, imidazolum et D-tryptophanum non assimilantur. Amylum non formatur. Biotinum externum ad crescentiam necessarium est. Augmentum in
temperatura 30 C non fiunt. Non crescit in medio 10 mg mll cycloheximido addito.
Typus: USA: Louisiana: Baton Rouge, Isolata a ile coleoptorum adultus (Cantharidae: Rhaxonycha sp.) ex floris Cornus
drummondii, 2003, e.g. N.H. Nguyen et al. (NRRL Y-22750 – holotypus; CBS 9905 – isotypus).
After 7 d growth in YM broth at 25 C cells are subglobose
to oval (3–6 3–6 mm), and occur singly or in pairs (Fig 4D).
Pseudohyphae are not present. After 7 d on YM agar at 25 C
colonies are off-white to cream and butyrous with a rough
surface. After 7 d on Dalmau plate culture on corn meal agar
at 25 C, pseudohyphae or true hyphae are not observed. Aerobic growth is off-white with an undulating margin. Asci arise
from chlamydospores on diluted V8 juice agar after 7 d at
17 C. Asci are sphaeropedunculate, usually 10–20 mm in
length, and containing one to two needle-shaped ascospores
(Fig 4E). Ascospores were observed in the type strain of the
species, NRRL Y-27750T, but neither clamydospores nor ascospores were observed in the other strain, NRRL Y-27816. See
Table 2 for a summary of physiological characteristics.
Candida chrysomelidarum N.H. Nguyen, S.O. Suh, Erbil &
M. Blackw., sp. nov. (Fig 4F)
Etym.: The species epithet, chrysomelidarum (chry.so.me.
lid’a.rum) L. gen. plu. fem. n., ‘‘of Chrysomelidae,’’ refers to
the host beetle family Chrysomelidae.
In medio liquido dextrosum et peptonum et extractum levidinis
continente post 7 dies ad 25 C cellulae vegetative ellipsoidae (4–
7 5–9 mm), singulae vel binae; pseudohyphae non fiunt. Cultura
in agaro extramalti et faecis continente post 7 dies ad 25 C, cremea et butyrosa. In agaro farina Zeae maydis confecto post 7
dies ad 25 C, pseudohyphae et hyphae verae non fiunt. Ascosporae non fiunt. Glucosum fermentatur. Galactosum, maltosum,
a-methyl-D-glucosidum, sucrosum, trehalosum, melibiosum, lactosum, cellobiosum, melezitosum, raffinosum, inulinum, amylum
solubile et D-xylosum non fermentantur. Glucosum, L-sorbosum,
D-glucosaminum (lente), sucrosum, maltosum, trehalosum, cellobiosum, salicinum, arbutinum, melezitosum, glycerolum (lente),
ribitolum, xylitolum, D-glucitolum (lente), D-mannitolum, gluconolactonum, 2-keto-D-gluconatum, D-gluconatum, acidum succinicum, acidum citricum (lente) et ethanolum assimilantur.
Galactosum, D-ribosum, D-xylosum, L-arabinosum, D-arabinosum, L-rhamnosum, a-methyl-D-glucosidum, melibiosum, lactosum, raffinosum, inulinum, amylum solubile, erythritolum,
L-arabinitolum, galactitolum, inositolum, D-glucuronatum, DLacidum lacticum, methanolum, propane-1, 2-diolum, butano-2,
3-diolum, acidum quinicum et D-glucaratum non assimilantur.
Ethylaminum, L-lysinum, cadaverinum et glucosaminum (lente)
assimilantur. Kalium nitratum, natrium nitritum, creatinum, creatininum, imidazolum et D-tryptophanum non assimilantur.
Amylum non formatur. Biotinum externum ad crescentiam necessarium est. Augmentum in temperatura 35 C non fiunt. Non
crescit in medio 10 mg mll cycloheximido addito.
Typus: Panama: Barro Colorado Island, isolata a ile coleopterorum adultus (Chrysomelidae), 2002, e.g. Suh et al. (NRRL Y27749 – holotypus; CBS 9904 – isotypus).
After 7 d growth in YM broth at 25 C cells are ellipsoidal (4–
7 5–9 mm), and occur singly or in pairs (Fig 4F). Pseudohyphae
New yeast species from insects
are not present. After 7 d on YM agar at 25 C colonies are
white and butyrous. After 7 d Dalmau plate culture on corn
meal agar at 25 C, pseudohyphae and true hyphae are not
present. Aerobic growth is off-white and smooth with a glossy
surface. No ascospores are present on corn meal agar or diluted V8 juice agar after two months. See Table 2 for a summary of physiological characteristics.
353
unsupported branch basal to the large-spored Metschnikowia
clade, placing it between C. kipukae and M. corniflorae (tree
not shown).
Identification of Metschnikowia spp. using traditional physiological methods is becoming increasingly difficult because
of homogeneity as more species are discovered in this rapidly
growing genus (Lachance et al. 1998b, 2003), and the use of D1/
D2 rDNA sequences is essential for rapid identification of
these species.
Discussion
Host relations
Phylogeny of the new yeast species from insects
A consensus of 12 most-parsimonious trees based on sequences of the D1/D2 region of the LSU rDNA included the
three new species, previously described Metschnikowia species, and related anamorphs available from GenBank (Fig 5).
Multiple gene data sets will be necessary to determine the topology of the deeper branches shown as unresolved on the
tree in Fig 5 (Rokas et al. 2003). The position of terminal groups,
however, is assumed to indicate close relationships. The new
species did not form a monophyletic group, but were placed in
three subclades among other members of the Metschnikowia
clade: (1) M. noctiluminum with M. viticola, C. kofuensis, and isolate NRRL Y-27752 with 100 % bootstrap support; (2) C. chrysomelidarum and C. rancensis with high statistical support and;
(3) M. corniflorae basal to the large-spored Metschnikowia clade
with moderate support (Fig 5). M. noctiluminum was a well-supported basal member of the M. viticola clade (A, Fig 5). The
clade itself received 100 % bootstrap support. However, the
position of the sister taxa were not well resolved, and as mentioned earlier, they may belong to the same taxon.
C. chrysomelidarum and C. rancensis formed a statistically
well-supported clade, although the position of this clade
among other members of the Metschnikowia clade was not
fully resolved by the comparison of D1/D2 sequences (Fig 5).
From the analysis based on the combined sequences of SSU
and LSU rDNA, C. chrysomelidarum also belonged to a major
subclade of the Metschnikowia clade that included Metschnikowia gruessii, Metschnikowia australis, Metschnikowia bicuspidata,
Metschnikowia krissii, Metschnikowia zobellii, Metschnilkowia reukaufii, Candida kofuensis, and M. viticola with comparatively
high statistical support (85 % by bootstrapping and 96 % by
B-MCMC analyses, data not shown).
M. corniflorae was a basal member of the large-spored
Metschnikowia clade and was phylogenetically distinct from
all of the Metschnikowia spp. compared (Fig 5). However, its
phylogenetic position within the Metschnikowia clade was
questionable as there was no well-supported close sister
taxon. The closest species, based on BLAST searches of the
D1/D2 sequence, was M. krissii, which occurs in a different
clade of the tree. Analyses of combined SSU and LSU rDNA sequences showed the species to form a branch with Metschnikowia lunata with 98 % bootstrap value (data not shown).
M. corniflorae is among the few species (including M. lunata,
Metschnikowia kunwiensis and Metschnikowia hibisci) that occur
between the large-spored Metschnikowia clade and other
Metschnikowia spp. in phylogenetic analyses (Lachance et al.
1998b). A separate analysis (with the short D1/D2 sequence
of M. hibisci included) showed that M. hibisci formed an
The yeasts associated with lacewings were placed into three
distinct clades: (A) Metschnikowia noctiluminum with M. viticola,
C. kofuensis, and isolate Y-27752 (B) Candida picachoensis and C.
pimensis, and (C) M. chrysoperlae and related taxa (A, B, C in
Fig 5). Although there have been reports of yeast associates
of lacewings, only within the last two years were several species studied using molecular techniques (e.g. Suh et al. 2004a;
Woolfolk & Inglis 2003). Suh et al. (2004a) described two new
species, C. pimensis and C. picachoensis, from Chrysoperla carnea
and other unidentified individuals of Chrysoperla respectively
collected from Arizona. In the present study, the same yeast
species also were present in C. rufilabris and in an unidentified
lacewing species collected in Louisiana. Multiple collections of
both species from the same lacewings in geographically distant localities indicates that these yeasts are fairly widespread
and not limited to certain environments or geographical
regions and the yeasts are probably not just transients but
have some degree of host specificity. Conversely M. noctiluminum, isolated from a previously unsampled green lacewing
species, Ceraeochrysa lineaticornis, was phylogenetically distinct from other lacewing associates (Fig 5). Although lacewings in the genera Ceraeochrysa and Chrysoperla both
belong to the tribe Chrypsopini, they have different behaviour
and habitat usage. The habitat differences may explain the
occurrence of phylogenetically distinct yeasts in their guts.
Lacewing associates from this study, M. noctiluminum,
C. picachoensis and C. pimensis, were obtained from adult lacewings. Although larvae of green lacewings are generalist predators, especially effective against aphids, the adults are not
predaceous and feed on nectar, pollen and aphid honeydew.
More study will be necessary in order to understand the possible interactions between the yeasts and the lacewings, perhaps as suggested for other insect associated yeasts, such as
those of the Pichia stipitis clade with xylose-fermenting capabilities in wood-boring beetles or detoxifying yeasts in drugstore beetles (e.g. Dowd 1989, 1991; Suh et al. 2003).
M. corniflorae was isolated from the gut of adult cantharid
beetles, Rhaxonycha sp., collected from flowers of the swamp
dogwood, C. drummondii (Table 1). The general habitat occupied by Rhaxonycha spp. is somewhat similar to that of lacewings mentioned above. Both the larvae and adults of the
beetles are predaceous on other insects, but adults also probably feed on nectar and/or pollen (Arnett et al. 2002). Phylogenetic analysis placed the yeast among species that have been
reported from studies of yeast communities of flowers with insect vectors (Lachance et al. 1998b, 1999, 2001b, 2005). We do
not know if the beetles merely serve as dispersers for M. corniflorae or if a more specific interaction occurs between them.
354
N. H. Nguyen et al.
Fig 5 – A consensus of 12 most-parsimonious trees obtained from sequence analysis of the LSU rDNA D1/D2 region.
Reference sequences of Metschnikowia spp. were selected to show the position of the three new species (bold type) and
isolate NRRL Y-27752 based on sequence comparisons of SSU and LSU rDNA. Saccharomyces cerevisiae was used as the
outgroup taxon. Tree length [ 1193; CI [ 0.4342; homoplasy index [ 0.5658; RI [ 0.6832; rescaled CI [ 0.2967. Numbers on
the branches (i.e. 100/100) are results of statistical analyses. The number to the left of the slash indicates bootstrap
support value above 50 % in 1000 replicates with parsimony analysis. The number to the right of the slash represents
probability nodes with Bayesian analysis. Arrow indicates the large-spored Metschnikowia (LSM) clade. A, B, and C, are
clades with lacewing associated yeasts; *, genotypes with identical D1/D2 sequences to the type strain shown on the
tree.
New yeast species from insects
C. chrysomelidarum was isolated only from the gut of adult
chrysomelid beetles from Panama, while its closest relative,
Candida rancensis, was isolated from rotting logs of Laurelia
sempervirens in Chile (Ramı́rez & González 1984). The majority
of chrysomelid beetle larvae are phytophagous, while the
adults feed on foliage and sometimes flower parts including
pollen (Arnett et al. 2002).
Isolate NRRL Y-27752, isolated from an adult caddisfly,
Hydropsyche sp., was closely related to C. kofuensis and M. viticola from grapes in Japan and Hungary, respectively (Mikata
et al. 1999; Péter et al. 2005). The larvae of Hydropsyche sp. are
aquatic and omnivorous, feeding on organic material that
flows through their silken nets; the adults, however, sometimes feed on nectar and honeydew as is likely in this case
(Malicky 1989).
As we have reviewed above, the insects in this study occupied varied habitats, but in general most were associated
with plants. The life histories of the insects vary in feeding
guild with larvae being mostly predaceous and adults often
feeding on or otherwise associated with flowers. The adult
insect hosts almost certainly are important dispersers of
the yeasts, but the possibility of additional interactions
among the yeasts and insects cannot be excluded. The yeasts
reported here are both taxonomically and physiologically different from most strains we have previously studied from
beetles feeding on a variety of basidiomata (Suh & Blackwell
2004; Suh et al. 2004b) or wood (Suh et al. 2003). These results
are to be expected based on the differences in the biology of
the hosts and the nutritional resources available to the
yeasts.
Acknowledgements
We thank Cletus Kurtzman (NRRL) and Teun Boekhout and
Vincent Robert (CBS) for providing reference yeast cultures
and for placing the yeast isolates from this study in culture
collections under their care. We also thank Catherine Tauber
and Michael Ferro for identifying the lacewing and caddisfly
hosts, respectively, and John Morse for references on adult
caddisfly biology. We acknowledge Glenda Newman, principal, North Corbin Elementary School, Walker, LA, USA, for
permission to collect at the school. Some collections were
made with Joseph V. McHugh at the Smithsonian Tropical
Research Institution, Barro Colorado Research Station, Panama, and we thank him and the Smithsonian staff for logistical support in obtaining accommodations and permits. The
staff of the M. D. Socolofsky Sciences Microscopy Facility,
Louisiana State University, graciously assisted with microscopic expertise during this study. The GenBank public database is also acknowledged. This research was supported by
the National Science Foundation, Biodiversity Surveys and
Inventories Program (DEB-0072741 and DEB-0417180), including REU Supplements, and a Howard Hughes Medical Institute grant through the Undergraduate Biological Sciences
Education Program to Louisiana State University. We also
acknowledge the use of the DNA sequencing facility supported by NSF Multiuser Equipment Grant (DBI-0400797) to
Robb Brumfield.
355
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