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2018
Current study was designed to evaluate Coumalic Acid theoretically, which is a Bio-organic molecule. The structural, spectroscopic like the Infrared and UV-Visible properties were investigated using a quantum calculation approach under the density functional theory at B3LYP/6-31G(d) data set. The Infrared spectrogram lies between 400-3800 cm-1 with a few coercion and minute peaks. Thermochemistry calculations show that molecule is exothermic in nature, NMR H 1 and C 13 prediction results are tabulated. Today's Challenges in Computational Chemistry is use of the appropriate tool and method to highlight the chemical property of mention molecule which is also highlight in the current research. The main advantage of virtual analysis provides an edge to easily view the electron shift, donation and withdrawing effect easily. The computational evaluation approach used here could also be useful for investigation of other bio-organic compounds.
Vibrational Spectroscopy
Structure and vibrational spectra of p-coumaric acid dimers by DFT methods2019 •
Coumarins are a class of secondary metabolites derived from cinnamic acid, widely distributed in the plant kingdom, which present important biological activities (antioxidant, anti-inflammatory, anticoagulant, antiviral and anticancer). Heraclenol is a coumarin that exhibits HIV replication inhibitory activity in vitro. Molecular modeling consists of a set of features and software for visualization, construction, editing and analysis of molecules that serve as the basis for pharmacological planning. The purpose of this study was to characterize electronically and structurally, coumarin Heraclenol, using the theory of functional density (DFT), as a stage of rational development of new drugs (Drug Design). The methodology of the present study was developed in the following steps: the Heraclenol molecule (obtained from the chewspider® repository) was constructed and visualized and pre-optimized using Avogadro® software. Afterwards, the heraclenol structure was optimized through the principle of energy minimization, using the DFT (functional density theory), calculations performed with the GAMESS software by the Hartree-Fock method with hybrid functions B3LYP and the base function 6 - 311G **, obtaining the molecular structure with potential energy of - 2136.01968455 Eh. The optimization of the structure generated some results as: Components (Nuclear repulsion: 1808.5375955740 Eh; Electronic energy: -1070.3301436839 Eh; An electric energy: -5053.8978063137 Eh, Electric energy two: 2175.0300670558 Eh), Components Virial (kinetic energy: 1065.6895408749 Eh; Virial: 2,0043545541); Dipole Moment (4.88971 Debye). With the data obtained from the optimization, it was possible to plot the surface map of electrostatic potential (MESP), making it possible to identify the regions of higher nucleophilicity in the oxygen atoms (O1, O2, O3, O5, O6) and the more electrophilic region in the hydrogen atoms (H23, H24, H34, H35, H36, H37, H38), justified by the difference in electronegativity between the oxygen and hydrogen atoms. It was also possible to plot the HOMO frontier orbitals (-6.121262 eV) and LUMO (-1.893912 eV). Using the Homo and Lumo values, it was possible to calculate several molecular descriptors such as: Calculated Ionization Potential (I = -6, 122562 eV), electronic affinity (A = -1.893912 eV), chemical motility (S = -0.23648 eV), chemical potential (η = -2,11432 eV), electrophilicity index (ω = -3.79931 eV), electronic chemical potential (μ = 4.00824 eV), Electronegativity (χ = -4.008237 eV) which help to predict the formation of chemical bonds and the physical and chemical properties of the compound. The present work is a fundamental step for future studies of drug design, aiming at understanding and promoting the antiviral potential of coumarin Heraclenol.
International Journal of Research and Analytical Reviews (IJRAR)
Vibrational Spectral Analysis on FT-IR, FT- Raman, 1 H & 13 C NMR and UV-Visible using Density Functional Theory (DFT) investigation: Docking and Antibacterial Studies of 4- Carboxyphenylboronic acid2018 •
The FT-IR and FT-Raman spectra of 4-Carboxylphenylboronic acid (4CPBA) have been recorded in the range 4000-400 cm-1 and 4000-100 cm-1 respectively. Also the UV spectra of 4CPBA have been recorded and analyzed. The molecular structures, fundamental vibrational frequencies and intensity of the vibrational bands are investigated and interpreted theoretically with the use of structure optimization and normal coordinate factor filed calculations based on density functional theory (DFT) with basis set 6-311++G(d,p). The hyper conjugative interaction energy E (2) and electron densities of donor (i) and acceptor (j) bonds were calculated using NBO analysis. The energy gap of the molecule was found using HOMO-LUMO calculations. In addition studies of 1 H & 13 C NMR chemical shift values of 4CPBA in the ground state for LANL2DZ/6-311++G(d,p) basis set were also calculated using Gauge independent atomic orbital (GIAO) method. The UV-Visible analysis of the 4CPBA with LANL2DZ/6-311++G(d,p) level of basis set. From the title molecule various ligand are using in the cervical cancer protein by docking. The 4CPBA has been screened to antimicrobial activity and found to exhibit antibacterial effects. From, these the geometric parameters, harmonic vibrational frequencies, IR intensities, Raman intensities and absorption wavelength was compared with the available experimental data of the molecule.
Journal of the Serbian Chemical Society
Density functional theory: 1H and 13C-NMR spectra of some coumarin derivatives2014 •
For some synthesized coumarin derivatives, 1H and 13C NMR isotropic chemical shifts and some other molecular properties were calculated using density functional theory. The calculations yield reliable results, that are in good correlation with experimental data. This is a good basis for the collaboration between experimentalists and quantum chemists.
Spectrochimica Acta Part A-molecular and Biomolecular Spectroscopy
Molecular structure and vibrational assignments of hippuric acid: A detailed density functional theoretical study2009 •
2016 •
Coumarin derivatives are used in a wide range of applications such as dye lasers, antioxidant agents, HIV inhibitors and anticoagulants and have attracted considerable research interest. The optimized geometric bond lengths, HOMO-LUMO energies and vibrational spectra are computed by DFT method employing B3LYP exchange correlation with the 6-311G** basis set. The vibrational spectra are also recorded experimentally in the region 4000- 400 cm-1, which show good correlation with theoretical vibrational spectra. It is observed that UV-Vis peak absorption wavelength have a positive correlation with the resonance states of coumarin derivatives and it depends on the nature and position of the substituents.
Physical Chemistry Research
Quantitative Structure Activity Relationship Analysis of Coumarins as Free Radical Scavengers by Genetic Function Algorithm2018 •
2017 •
The topological features of the charge densities, r(r), and the chemical reactivity of two most biologically relevant and chemically interesting scaffold systems i.e. trans-communic acid and imbricatolic acid have been determined using density functional theory. To identify, characterize, and quantify efficiently, the non-covalent interactions of the atoms in the molecules have been investigated quantitatively using Bader's quantum theory of atoms-in-molecules (QTAIM) technique. The bond path is shown to persist for a range of weak H- - -H as well as C- - -H internuclear distances (in the range of 2.0–3.0 A˚). These interactions exhibit all the hallmarks of a closed-shell weak interaction. To get insights into both systems, chemical reactivity descriptors, such as HOMO–LUMO, ionization potential, and chemical hardness, have been calculated and used to probe the relative stability and chemical reactivity. Some other useful information is also obtained with the help of several other electronic parameters, which are closely related to the chemical reactivity and reaction paths of the products investigated. Trans-communic acid seems to be chemically more sensitive when compared with imbricatolic acid due to its experimentally observed higher half-maximal inhibitory concentration (bioactivity parameter) value, which is in accordance with its higher chemical reactivity as theoretically predicted using density functional theory-based reactivity index. The quantum chemical calculations have also been performed in solution using different solvents, and the relative order of their structural and electronic properties as well as QTAIM-based parameters show patterns similar to those observed in gas phase only. This study further exemplifies the use and successful application of the bond path concept and the quantum theory of atoms-in-molecules.
2016 •
Geophysical Research Letters
Observation of repeated intense near-Earth reconnection on closed field lines with Cluster, Double Star, and other spacecraft2007 •
2019 •
Reproductive Biology and Endocrinology
Is there a link between blastomere contact surfaces of day 3 embryos and live birth rate?2012 •
Physical Review D
Measurement of the cosmic ray and neutrino-induced muon flux at the Sudbury neutrino observatory2009 •
American Journal of Public Health
Relationship Between Adverse Childhood Experiences and Homelessness and the Impact of Axis I and II Disorders2013 •
Bulletin of the American Astronomical Society
Primordial Non-Gaussianity2019 •
Organic Mass Spectrometry
A voltage marker for X scale calibration of mass-analysed ion kinetic energy spectra1983 •
Nanoscale Research Letters
Nanotwinning and structural phase transition in CdS quantum dots2012 •
Resources, Conservation and Recycling
Establishment of an economic evaluation model for urban recycled water2013 •
Physical Review B
Search for low-temperature staging transitions in stage-2 potassium-graphite intercalation compounds1987 •
Expert opinion on therapeutic targets
Do preclinical studies suggest that CD99 is a potential therapeutic target in acute myeloid leukemia and the myelodysplastic syndromes?2018 •
Journal of Osteopathic Medicine
In Vitro Biomechanical Strain Regulation of Fibroblast Wound Healing2013 •
Journal of Lightwave Technology
Performance Comparison Between 4D Trellis Coded Modulation and PAM-4 for Low-Cost 400 Gbps WDM Optical Networks2016 •
Exército Brasileiro: Perspectivas Interdisciplinares
Exército Brasileiro: Perspectivas Interdisciplinares2022 •
Evidence-Based Complementary and Alternative Medicine
Behavioral and Histopathological Study of Changes in Spinal Cord Injured Rats Supplemented withSpirulina platensis2014 •
Powder Technology
Dry fractionation of olive pomace as a sustainable process to produce fillers for biocomposites2018 •
2014 •
2020 •
2008 •
22nd Annual Conference of the International Group for Lean Construction
Recommendations for Practical Application of Transparency in Construction Site2014 •